Transcript: ENSMUST00000143871.9 Gm5577-202

Description

predicted gene 5577 [Source:MGI Symbol;Acc:MGI:3648213]

Location

Chromosome 6: 87,958,623-87,961,196 forward strand.

About this transcript

This transcript has 2 exons, is associated with 616 variant alleles and maps to 55 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000084950.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000153372.2	Gm5577-203	815	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000285339.1	Gm5577-218	1727	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000143871.9	Gm5577-202	1499	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000134600.2	Gm5577-201	1434	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000285342.1	Gm5577-221	1364	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000285325.1	Gm5577-204	1090	No protein	-	lncRNA	-
ENSMUST00000285328.1	Gm5577-207	1041	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000285335.1	Gm5577-214	1016	No protein	-	lncRNA	-
ENSMUST00000285337.1	Gm5577-216	986	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000285346.1	Gm5577-225	985	No protein	-	lncRNA	-
ENSMUST00000285341.1	Gm5577-220	976	No protein	-	lncRNA	-
ENSMUST00000285345.1	Gm5577-224	964	No protein	-	lncRNA	-
ENSMUST00000285344.1	Gm5577-223	942	No protein	-	lncRNA	-
ENSMUST00000285340.1	Gm5577-219	940	No protein	-	lncRNA	-
ENSMUST00000285343.1	Gm5577-222	881	No protein	-	lncRNA	-
ENSMUST00000285333.1	Gm5577-212	827	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000285336.1	Gm5577-215	780	No protein	-	lncRNA	-
ENSMUST00000285329.1	Gm5577-208	741	No protein	-	lncRNA	-
ENSMUST00000285330.1	Gm5577-209	731	No protein	-	lncRNA	-
ENSMUST00000285327.1	Gm5577-206	723	No protein	-	lncRNA	-
ENSMUST00000285326.1	Gm5577-205	650	No protein	-	lncRNA	-
ENSMUST00000285338.1	Gm5577-217	648	No protein	-	lncRNA	-
ENSMUST00000285332.1	Gm5577-211	577	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000285331.1	Gm5577-210	532	No protein	-	lncRNA	-
ENSMUST00000285347.1	Gm5577-226	490	No protein	-	lncRNA	-
ENSMUST00000285334.1	Gm5577-213	450	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,499 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000143871.9

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENSMUST00000143871.9 Gm5577-202

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Transcript: ENSMUST00000143871.9 Gm5577-202

Summary

About Us

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