Transcript: ENSMUST00000143713.2 Spn-202

Description

sialophorin [Source:MGI Symbol;Acc:MGI:98384]

Gene Synonyms

3E8 antigen, A630014B01Rik, Cd43, Galgp, Ly-48, Ly48, leukosialin

Location

Chromosome 7: 126,731,404-126,736,986 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 2 domains and features, is associated with 782 variant alleles and maps to 134 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000051457.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000049931.6	Spn-201	3743	395aa	ENSMUSP00000049534.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS21858	P15702 Q544C5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000205483.2	Spn-203	597	140aa	ENSMUSP00000145637.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0U1RNN5	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000143713.2	Spn-202	2161	395aa	ENSMUSP00000122787.2	Nonsense mediated decay	CCDS21858	P15702 Q544C5	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 4, Coding exons: 1, Transcript length: 2,161 bps, Translation length: 395 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P15702

CCDS

This transcript is a member of the Mouse CCDS set: CCDS21858

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000143713.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000143713.2 Spn-202

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Transcript: ENSMUST00000143713.2 Spn-202

Summary

About Us

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