Transcript: ENSMUST00000143129.4 Gm26652-201

Description

predicted gene, 26652 [Source:MGI Symbol;Acc:MGI:5477146]

Location

Chromosome X: 19,023,204-19,033,478 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 1049 variant alleles and maps to 75 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000097497.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000320335.1	Gm26652-213	899	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000150801.2	Gm26652-202	5060	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000320342.1	Gm26652-220	2519	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000143129.4	Gm26652-201	2302	No protein	-	lncRNA	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000320353.1	Gm26652-231	2154	No protein	-	lncRNA	-
ENSMUST00000320344.1	Gm26652-222	1930	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000320350.1	Gm26652-228	1801	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000320538.1	Gm26652-235	1715	No protein	-	lncRNA	-
ENSMUST00000320345.1	Gm26652-223	1704	No protein	-	lncRNA	-
ENSMUST00000242746.2	Gm26652-207	1633	No protein	-	lncRNA	-
ENSMUST00000245324.2	Gm26652-212	1590	No protein	-	lncRNA	-
ENSMUST00000320355.1	Gm26652-233	1548	No protein	-	lncRNA	-
ENSMUST00000320341.1	Gm26652-219	1517	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000320356.1	Gm26652-234	1497	No protein	-	lncRNA	-
ENSMUST00000320336.1	Gm26652-214	1435	No protein	-	lncRNA	-
ENSMUST00000320340.1	Gm26652-218	1394	No protein	-	lncRNA	-
ENSMUST00000320337.1	Gm26652-215	1386	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000244767.1	Gm26652-210	1364	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000320339.1	Gm26652-217	1328	No protein	-	lncRNA	-
ENSMUST00000320338.1	Gm26652-216	1275	No protein	-	lncRNA	-
ENSMUST00000244519.2	Gm26652-209	1245	No protein	-	lncRNA	-
ENSMUST00000242295.2	Gm26652-206	1222	No protein	-	lncRNA	-
ENSMUST00000320351.1	Gm26652-229	1218	No protein	-	lncRNA	-
ENSMUST00000320539.1	Gm26652-236	1183	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000180592.4	Gm26652-203	1110	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000241874.2	Gm26652-205	1107	No protein	-	lncRNA	-
ENSMUST00000320347.1	Gm26652-225	1090	No protein	-	lncRNA	-
ENSMUST00000320352.1	Gm26652-230	1050	No protein	-	lncRNA	-
ENSMUST00000245265.2	Gm26652-211	1022	No protein	-	lncRNA	-
ENSMUST00000320540.1	Gm26652-237	1001	No protein	-	lncRNA	-
ENSMUST00000320346.1	Gm26652-224	930	No protein	-	lncRNA	-
ENSMUST00000320343.1	Gm26652-221	859	No protein	-	lncRNA	-
ENSMUST00000243605.1	Gm26652-208	810	No protein	-	lncRNA	-
ENSMUST00000320354.1	Gm26652-232	776	No protein	-	lncRNA	-
ENSMUST00000320348.1	Gm26652-226	510	No protein	-	lncRNA	-
ENSMUST00000320349.1	Gm26652-227	482	No protein	-	lncRNA	-
ENSMUST00000181672.2	Gm26652-204	475	No protein	-	lncRNA	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000320541.1	Gm26652-238	454	No protein	-	lncRNA	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 2,302 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENSMUST00000143129.4

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENSMUST00000143129.4 Gm26652-201

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Transcript: ENSMUST00000143129.4 Gm26652-201

Summary

About Us

Get help

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