Transcript: ENSMUST00000142942.9 Ube2d-ps-205

Description

ubiquitin-conjugating enzyme E2D, pseudogene [Source:MGI Symbol;Acc:MGI:1913774]

Gene Synonyms

2210015D19Rik

Location

Chromosome 11: 5,711,917-5,734,714 forward strand.

About this transcript

This transcript has 7 exons, is associated with 1708 variant alleles and maps to 129 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000121496.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000354514.1	Ube2d-ps-243	435	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000242125.1	Ube2d-ps-219	2783	No protein	-	lncRNA	-
ENSMUST00000240871.2	Ube2d-ps-207	2123	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242287.2	Ube2d-ps-222	2108	No protein	-	lncRNA	-
ENSMUST00000142942.9	Ube2d-ps-205	2077	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000242653.1	Ube2d-ps-225	2046	No protein	-	lncRNA	-
ENSMUST00000137510.10	Ube2d-ps-204	2040	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000245071.2	Ube2d-ps-237	1996	No protein	-	lncRNA	-
ENSMUST00000240860.2	Ube2d-ps-206	1937	No protein	-	lncRNA	-
ENSMUST00000241722.2	Ube2d-ps-215	1902	No protein	-	lncRNA	-
ENSMUST00000242164.2	Ube2d-ps-220	1897	No protein	-	lncRNA	-
ENSMUST00000246109.2	Ube2d-ps-239	1863	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000241855.2	Ube2d-ps-216	1834	No protein	-	lncRNA	-
ENSMUST00000354562.1	Ube2d-ps-290	1825	No protein	-	lncRNA	-
ENSMUST00000243514.2	Ube2d-ps-227	1823	No protein	-	lncRNA	-
ENSMUST00000354525.1	Ube2d-ps-254	1749	No protein	-	lncRNA	-
ENSMUST00000241295.2	Ube2d-ps-209	1748	No protein	-	lncRNA	-
ENSMUST00000241641.2	Ube2d-ps-212	1716	No protein	-	lncRNA	-
ENSMUST00000241318.1	Ube2d-ps-210	1694	No protein	-	lncRNA	-
ENSMUST00000354524.1	Ube2d-ps-253	1687	No protein	-	lncRNA	-
ENSMUST00000246364.2	Ube2d-ps-242	1667	No protein	-	lncRNA	-
ENSMUST00000354537.1	Ube2d-ps-266	1624	No protein	-	lncRNA	-
ENSMUST00000240990.2	Ube2d-ps-208	1604	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000354518.1	Ube2d-ps-247	1602	No protein	-	lncRNA	-
ENSMUST00000241653.1	Ube2d-ps-213	1585	No protein	-	lncRNA	-
ENSMUST00000354548.1	Ube2d-ps-276	1582	No protein	-	lncRNA	-
ENSMUST00000354547.1	Ube2d-ps-275	1569	No protein	-	lncRNA	-
ENSMUST00000242076.2	Ube2d-ps-218	1562	No protein	-	lncRNA	-
ENSMUST00000354538.1	Ube2d-ps-267	1552	No protein	-	lncRNA	-
ENSMUST00000244863.1	Ube2d-ps-235	1539	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000354556.1	Ube2d-ps-284	1533	No protein	-	lncRNA	-
ENSMUST00000354589.1	Ube2d-ps-317	1532	No protein	-	lncRNA	-
ENSMUST00000354522.1	Ube2d-ps-251	1531	No protein	-	lncRNA	-
ENSMUST00000354542.1	Ube2d-ps-270	1531	No protein	-	lncRNA	-
ENSMUST00000243825.2	Ube2d-ps-228	1513	No protein	-	lncRNA	-
ENSMUST00000244067.2	Ube2d-ps-230	1484	No protein	-	lncRNA	-
ENSMUST00000354550.1	Ube2d-ps-278	1465	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000243913.2	Ube2d-ps-229	1447	No protein	-	lncRNA	-
ENSMUST00000354543.1	Ube2d-ps-271	1440	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000354588.1	Ube2d-ps-316	1440	No protein	-	lncRNA	-
ENSMUST00000244481.2	Ube2d-ps-233	1432	No protein	-	lncRNA	-
ENSMUST00000354523.1	Ube2d-ps-252	1429	No protein	-	lncRNA	-
ENSMUST00000244946.2	Ube2d-ps-236	1406	No protein	-	lncRNA	-
ENSMUST00000354552.1	Ube2d-ps-280	1396	No protein	-	lncRNA	-
ENSMUST00000244192.2	Ube2d-ps-231	1370	No protein	-	lncRNA	-
ENSMUST00000244568.1	Ube2d-ps-234	1366	No protein	-	lncRNA	-
ENSMUST00000354541.1	Ube2d-ps-269	1365	No protein	-	lncRNA	-
ENSMUST00000246144.2	Ube2d-ps-240	1354	No protein	-	lncRNA	-
ENSMUST00000244472.1	Ube2d-ps-232	1333	No protein	-	lncRNA	-
ENSMUST00000243312.2	Ube2d-ps-226	1331	No protein	-	lncRNA	-
ENSMUST00000354536.1	Ube2d-ps-265	1313	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000241635.1	Ube2d-ps-211	1299	No protein	-	lncRNA	-
ENSMUST00000354517.1	Ube2d-ps-246	1278	No protein	-	lncRNA	-
ENSMUST00000135394.3	Ube2d-ps-203	1276	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000354545.1	Ube2d-ps-273	1271	No protein	-	lncRNA	-
ENSMUST00000354551.1	Ube2d-ps-279	1253	No protein	-	lncRNA	-
ENSMUST00000354544.1	Ube2d-ps-272	1248	No protein	-	lncRNA	-
ENSMUST00000245977.1	Ube2d-ps-238	1247	No protein	-	lncRNA	-
ENSMUST00000246313.2	Ube2d-ps-241	1226	No protein	-	lncRNA	-
ENSMUST00000354583.1	Ube2d-ps-311	1226	No protein	-	lncRNA	-
ENSMUST00000354554.1	Ube2d-ps-282	1217	No protein	-	lncRNA	-
ENSMUST00000242272.2	Ube2d-ps-221	1215	No protein	-	lncRNA	-
ENSMUST00000354528.1	Ube2d-ps-257	1185	No protein	-	lncRNA	-
ENSMUST00000242017.2	Ube2d-ps-217	1135	No protein	-	lncRNA	-
ENSMUST00000354534.1	Ube2d-ps-263	1122	No protein	-	lncRNA	-
ENSMUST00000354540.1	Ube2d-ps-268	1121	No protein	-	lncRNA	-
ENSMUST00000354546.1	Ube2d-ps-274	1112	No protein	-	lncRNA	-
ENSMUST00000354553.1	Ube2d-ps-281	1059	No protein	-	lncRNA	-
ENSMUST00000354567.1	Ube2d-ps-295	1056	No protein	-	lncRNA	-
ENSMUST00000354555.1	Ube2d-ps-283	1037	No protein	-	lncRNA	-
ENSMUST00000354520.1	Ube2d-ps-249	1024	No protein	-	lncRNA	-
ENSMUST00000354531.1	Ube2d-ps-260	1013	No protein	-	lncRNA	-
ENSMUST00000242525.2	Ube2d-ps-224	1012	No protein	-	lncRNA	-
ENSMUST00000354563.1	Ube2d-ps-291	985	No protein	-	lncRNA	-
ENSMUST00000354566.1	Ube2d-ps-294	967	No protein	-	lncRNA	-
ENSMUST00000354558.1	Ube2d-ps-286	958	No protein	-	lncRNA	-
ENSMUST00000354559.1	Ube2d-ps-287	941	No protein	-	lncRNA	-
ENSMUST00000354586.1	Ube2d-ps-314	927	No protein	-	lncRNA	-
ENSMUST00000354532.1	Ube2d-ps-261	916	No protein	-	lncRNA	-
ENSMUST00000354587.1	Ube2d-ps-315	910	No protein	-	lncRNA	-
ENSMUST00000354571.1	Ube2d-ps-299	892	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000354568.1	Ube2d-ps-296	881	No protein	-	lncRNA	-
ENSMUST00000354521.1	Ube2d-ps-250	867	No protein	-	lncRNA	-
ENSMUST00000354516.1	Ube2d-ps-245	860	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000354581.1	Ube2d-ps-309	851	No protein	-	lncRNA	-
ENSMUST00000241665.2	Ube2d-ps-214	817	No protein	-	lncRNA	-
ENSMUST00000354570.1	Ube2d-ps-298	810	No protein	-	lncRNA	-
ENSMUST00000354572.1	Ube2d-ps-300	785	No protein	-	lncRNA	-
ENSMUST00000354565.1	Ube2d-ps-293	783	No protein	-	lncRNA	-
ENSMUST00000354578.1	Ube2d-ps-306	769	No protein	-	lncRNA	-
ENSMUST00000354561.1	Ube2d-ps-289	767	No protein	-	lncRNA	-
ENSMUST00000354575.1	Ube2d-ps-303	760	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000354529.1	Ube2d-ps-258	751	No protein	-	lncRNA	-
ENSMUST00000354535.1	Ube2d-ps-264	739	No protein	-	lncRNA	-
ENSMUST00000354577.1	Ube2d-ps-305	729	No protein	-	lncRNA	-
ENSMUST00000354580.1	Ube2d-ps-308	723	No protein	-	lncRNA	-
ENSMUST00000354573.1	Ube2d-ps-301	709	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000354515.1	Ube2d-ps-244	705	No protein	-	lncRNA	-
ENSMUST00000354564.1	Ube2d-ps-292	704	No protein	-	lncRNA	-
ENSMUST00000354569.1	Ube2d-ps-297	703	No protein	-	lncRNA	-
ENSMUST00000354519.1	Ube2d-ps-248	702	No protein	-	lncRNA	-
ENSMUST00000354574.1	Ube2d-ps-302	686	No protein	-	lncRNA	-
ENSMUST00000354584.1	Ube2d-ps-312	686	No protein	-	lncRNA	-
ENSMUST00000354557.1	Ube2d-ps-285	646	No protein	-	lncRNA	-
ENSMUST00000354576.1	Ube2d-ps-304	630	No protein	-	lncRNA	-
ENSMUST00000354549.1	Ube2d-ps-277	627	No protein	-	lncRNA	-
ENSMUST00000354560.1	Ube2d-ps-288	623	No protein	-	lncRNA	-
ENSMUST00000354579.1	Ube2d-ps-307	622	No protein	-	lncRNA	-
ENSMUST00000354582.1	Ube2d-ps-310	602	No protein	-	lncRNA	-
ENSMUST00000354526.1	Ube2d-ps-255	599	No protein	-	lncRNA	-
ENSMUST00000131130.8	Ube2d-ps-202	595	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000354530.1	Ube2d-ps-259	575	No protein	-	lncRNA	-
ENSMUST00000354585.1	Ube2d-ps-313	540	No protein	-	lncRNA	-
ENSMUST00000242511.2	Ube2d-ps-223	464	No protein	-	lncRNA	-
ENSMUST00000354527.1	Ube2d-ps-256	439	No protein	-	lncRNA	-
ENSMUST00000354533.1	Ube2d-ps-262	380	No protein	-	lncRNA	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 2,077 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000142942.9

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

overlaps pseudogene [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000142942.9 Ube2d-ps-205

Summary

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Transcript: ENSMUST00000142942.9 Ube2d-ps-205

Summary

About Us

Get help

Our sister sites

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