Transcript: ENSMUST00000141020.2 Card6-202

Description

caspase recruitment domain family, member 6 [Source:MGI Symbol;Acc:MGI:3032959]

Location

Chromosome 15: 5,134,619-5,137,966 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 9 domains and features, is associated with 717 variant alleles and maps to 64 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000041849.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000118365.3	Card6-201	5995	1175aa	ENSMUSP00000112833.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49573	E9PWH2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000141020.2	Card6-202	697	194aa	ENSMUSP00000118817.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3YYK3	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 697 bps, Translation length: 194 residues

Transcript Support Level (TSL)

TSL:2

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSMUST00000141020.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000141020.2 Card6-202

Summary

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Transcript: ENSMUST00000141020.2 Card6-202

Summary

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