Transcript: ENSMUST00000140452.4 Fer1l5-201

Description

fer-1-like 5 (C. elegans) [Source:MGI Symbol;Acc:MGI:3616091]

Gene Synonyms

4930533C12Rik

Location

Chromosome 1: 36,455,969-36,461,191 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 1 domain and feature, is associated with 739 variant alleles and maps to 126 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000037432.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000179162.7	Fer1l5-202	6315	2038aa	ENSMUSP00000142130.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS78562	P0DM40	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000140452.4	Fer1l5-201	1723	209aa	ENSMUSP00000144430.2	Nonsense mediated decay		A0A0J9YV09	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000202030.2	Fer1l5-203	1420	261aa	ENSMUSP00000143919.2	Nonsense mediated decay		A0A0J9YTZ2	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 12, Coding exons: 6, Transcript length: 1,723 bps, Translation length: 209 residues

Transcript Support Level (TSL)

TSL:1

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000140452.4

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000140452.4 Fer1l5-201

Summary

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Transcript: ENSMUST00000140452.4 Fer1l5-201

Summary

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