Transcript: ENSMUST00000140346.10 Lpar5-202

Description

lysophosphatidic acid receptor 5 [Source:MGI Symbol;Acc:MGI:2685918]

Gene Synonyms

GPR93, Gpr92, LOC381810, LPA5

Location

Chromosome 6: 125,048,240-125,059,435 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 47 domains and features, is associated with 1136 variant alleles and maps to 93 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000067714.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000088292.7	Lpar5-201	1393	372aa	ENSMUSP00000085630.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3X9K0 Q149R9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000140346.10	Lpar5-202	1458	372aa	ENSMUSP00000119904.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6S365 Q149R9	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 1,458 bps, Translation length: 372 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q149R9

Transcript Support Level (TSL)

TSL:2

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSMUST00000140346.10

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

alternative 5' UTR [Definitions]

Transcript: ENSMUST00000140346.10 Lpar5-202

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Transcript: ENSMUST00000140346.10 Lpar5-202

Summary

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