Transcript: ENSMUST00000131907.11 Mir9-2hg-201

Description

Mir9-2 host gene [Source:MGI Symbol;Acc:MGI:2443574]

Gene Synonyms

C130071C03Rik, C130071C03Riken, NDIME

Location

Chromosome 13: 83,869,430-83,889,427 forward strand.

About this transcript

This transcript has 4 exons, is associated with 1178 variant alleles and maps to 196 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000050334.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000185281.8	Mir9-2hg-204	1465	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000244522.1	Mir9-2hg-224	3699	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000302552.1	Mir9-2hg-351	3676	No protein	-	lncRNA	-
ENSMUST00000243265.1	Mir9-2hg-219	3671	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000131907.11	Mir9-2hg-201	3660	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000246401.1	Mir9-2hg-237	3506	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242216.2	Mir9-2hg-209	3418	No protein	-	lncRNA	-
ENSMUST00000302555.1	Mir9-2hg-354	3257	No protein	-	lncRNA	-
ENSMUST00000244477.2	Mir9-2hg-222	3209	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000302502.1	Mir9-2hg-301	3116	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000302556.1	Mir9-2hg-355	3059	No protein	-	lncRNA	-
ENSMUST00000243856.1	Mir9-2hg-221	3031	No protein	-	lncRNA	-
ENSMUST00000302517.1	Mir9-2hg-316	3017	No protein	-	lncRNA	-
ENSMUST00000302459.1	Mir9-2hg-259	2933	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000245198.2	Mir9-2hg-229	2925	No protein	-	lncRNA	-
ENSMUST00000245829.1	Mir9-2hg-236	2834	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242455.2	Mir9-2hg-213	2608	No protein	-	lncRNA	-
ENSMUST00000245686.1	Mir9-2hg-234	2583	No protein	-	lncRNA	-
ENSMUST00000242785.2	Mir9-2hg-217	2568	No protein	-	lncRNA	-
ENSMUST00000302499.1	Mir9-2hg-299	2495	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242639.2	Mir9-2hg-216	2285	No protein	-	lncRNA	-
ENSMUST00000302534.1	Mir9-2hg-333	2280	No protein	-	lncRNA	-
ENSMUST00000302506.1	Mir9-2hg-305	2217	No protein	-	lncRNA	-
ENSMUST00000302446.1	Mir9-2hg-246	2197	No protein	-	lncRNA	-
ENSMUST00000302460.1	Mir9-2hg-260	2186	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000250033.1	Mir9-2hg-238	2160	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000250034.1	Mir9-2hg-239	2061	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000302448.1	Mir9-2hg-248	2054	No protein	-	lncRNA	-
ENSMUST00000302465.1	Mir9-2hg-265	2034	No protein	-	lncRNA	-
ENSMUST00000302447.1	Mir9-2hg-247	2030	No protein	-	lncRNA	-
ENSMUST00000302444.1	Mir9-2hg-244	2025	No protein	-	lncRNA	-
ENSMUST00000302458.1	Mir9-2hg-258	2013	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000302451.1	Mir9-2hg-251	1983	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000302491.1	Mir9-2hg-291	1972	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242541.1	Mir9-2hg-214	1940	No protein	-	lncRNA	-
ENSMUST00000241237.2	Mir9-2hg-207	1937	No protein	-	lncRNA	-
ENSMUST00000302440.1	Mir9-2hg-240	1905	No protein	-	lncRNA	-
ENSMUST00000302510.1	Mir9-2hg-309	1883	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242329.1	Mir9-2hg-211	1828	No protein	-	lncRNA	-
ENSMUST00000302486.1	Mir9-2hg-286	1736	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000302454.1	Mir9-2hg-254	1718	No protein	-	lncRNA	-
ENSMUST00000302450.1	Mir9-2hg-250	1701	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000302485.1	Mir9-2hg-285	1698	No protein	-	lncRNA	-
ENSMUST00000302461.1	Mir9-2hg-261	1665	No protein	-	lncRNA	-
ENSMUST00000245156.2	Mir9-2hg-228	1662	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000187663.3	Mir9-2hg-206	1660	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000302467.1	Mir9-2hg-267	1591	No protein	-	lncRNA	-
ENSMUST00000302453.1	Mir9-2hg-253	1548	No protein	-	lncRNA	-
ENSMUST00000182701.3	Mir9-2hg-202	1509	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000302457.1	Mir9-2hg-257	1496	No protein	-	lncRNA	-
ENSMUST00000182788.3	Mir9-2hg-203	1434	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000302472.1	Mir9-2hg-272	1417	No protein	-	lncRNA	-
ENSMUST00000302456.1	Mir9-2hg-256	1401	No protein	-	lncRNA	-
ENSMUST00000302492.1	Mir9-2hg-292	1401	No protein	-	lncRNA	-
ENSMUST00000302519.1	Mir9-2hg-318	1401	No protein	-	lncRNA	-
ENSMUST00000302531.1	Mir9-2hg-330	1372	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242421.2	Mir9-2hg-212	1362	No protein	-	lncRNA	-
ENSMUST00000302455.1	Mir9-2hg-255	1355	No protein	-	lncRNA	-
ENSMUST00000302462.1	Mir9-2hg-262	1354	No protein	-	lncRNA	-
ENSMUST00000302503.1	Mir9-2hg-302	1354	No protein	-	lncRNA	-
ENSMUST00000302558.1	Mir9-2hg-357	1345	No protein	-	lncRNA	-
ENSMUST00000302543.1	Mir9-2hg-342	1328	No protein	-	lncRNA	-
ENSMUST00000302501.1	Mir9-2hg-300	1323	No protein	-	lncRNA	-
ENSMUST00000241626.2	Mir9-2hg-208	1316	No protein	-	lncRNA	-
ENSMUST00000302549.1	Mir9-2hg-348	1312	No protein	-	lncRNA	-
ENSMUST00000302516.1	Mir9-2hg-315	1306	No protein	-	lncRNA	-
ENSMUST00000302443.1	Mir9-2hg-243	1289	No protein	-	lncRNA	-
ENSMUST00000245533.2	Mir9-2hg-232	1288	No protein	-	lncRNA	-
ENSMUST00000302476.1	Mir9-2hg-276	1274	No protein	-	lncRNA	-
ENSMUST00000302536.1	Mir9-2hg-335	1271	No protein	-	lncRNA	-
ENSMUST00000302452.1	Mir9-2hg-252	1266	No protein	-	lncRNA	-
ENSMUST00000302463.1	Mir9-2hg-263	1256	No protein	-	lncRNA	-
ENSMUST00000302530.1	Mir9-2hg-329	1242	No protein	-	lncRNA	-
ENSMUST00000243091.2	Mir9-2hg-218	1236	No protein	-	lncRNA	-
ENSMUST00000245301.2	Mir9-2hg-230	1224	No protein	-	lncRNA	-
ENSMUST00000302442.1	Mir9-2hg-242	1211	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000245644.2	Mir9-2hg-233	1196	No protein	-	lncRNA	-
ENSMUST00000302441.1	Mir9-2hg-241	1194	No protein	-	lncRNA	-
ENSMUST00000302522.1	Mir9-2hg-321	1185	No protein	-	lncRNA	-
ENSMUST00000302525.1	Mir9-2hg-324	1180	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000245701.1	Mir9-2hg-235	1178	No protein	-	lncRNA	-
ENSMUST00000302529.1	Mir9-2hg-328	1174	No protein	-	lncRNA	-
ENSMUST00000302527.1	Mir9-2hg-326	1171	No protein	-	lncRNA	-
ENSMUST00000302498.1	Mir9-2hg-298	1169	No protein	-	lncRNA	-
ENSMUST00000302538.1	Mir9-2hg-337	1168	No protein	-	lncRNA	-
ENSMUST00000302520.1	Mir9-2hg-319	1167	No protein	-	lncRNA	-
ENSMUST00000243746.2	Mir9-2hg-220	1154	No protein	-	lncRNA	-
ENSMUST00000244738.2	Mir9-2hg-225	1151	No protein	-	lncRNA	-
ENSMUST00000302449.1	Mir9-2hg-249	1145	No protein	-	lncRNA	-
ENSMUST00000302561.1	Mir9-2hg-360	1131	No protein	-	lncRNA	-
ENSMUST00000302523.1	Mir9-2hg-322	1130	No protein	-	lncRNA	-
ENSMUST00000302521.1	Mir9-2hg-320	1118	No protein	-	lncRNA	-
ENSMUST00000185600.2	Mir9-2hg-205	1102	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000302524.1	Mir9-2hg-323	1097	No protein	-	lncRNA	-
ENSMUST00000302553.1	Mir9-2hg-352	1073	No protein	-	lncRNA	-
ENSMUST00000302526.1	Mir9-2hg-325	1070	No protein	-	lncRNA	-
ENSMUST00000302507.1	Mir9-2hg-306	1065	No protein	-	lncRNA	-
ENSMUST00000244518.2	Mir9-2hg-223	1064	No protein	-	lncRNA	-
ENSMUST00000302464.1	Mir9-2hg-264	1060	No protein	-	lncRNA	-
ENSMUST00000302469.1	Mir9-2hg-269	1046	No protein	-	lncRNA	-
ENSMUST00000302562.1	Mir9-2hg-361	1045	No protein	-	lncRNA	-
ENSMUST00000302487.1	Mir9-2hg-287	1040	No protein	-	lncRNA	-
ENSMUST00000244914.2	Mir9-2hg-226	1031	No protein	-	lncRNA	-
ENSMUST00000302488.1	Mir9-2hg-288	1028	No protein	-	lncRNA	-
ENSMUST00000302466.1	Mir9-2hg-266	1027	No protein	-	lncRNA	-
ENSMUST00000302511.1	Mir9-2hg-310	1004	No protein	-	lncRNA	-
ENSMUST00000302528.1	Mir9-2hg-327	969	No protein	-	lncRNA	-
ENSMUST00000302468.1	Mir9-2hg-268	967	No protein	-	lncRNA	-
ENSMUST00000302508.1	Mir9-2hg-307	947	No protein	-	lncRNA	-
ENSMUST00000302489.1	Mir9-2hg-289	942	No protein	-	lncRNA	-
ENSMUST00000302475.1	Mir9-2hg-275	931	No protein	-	lncRNA	-
ENSMUST00000302557.1	Mir9-2hg-356	931	No protein	-	lncRNA	-
ENSMUST00000302445.1	Mir9-2hg-245	926	No protein	-	lncRNA	-
ENSMUST00000302470.1	Mir9-2hg-270	899	No protein	-	lncRNA	-
ENSMUST00000302495.1	Mir9-2hg-295	885	No protein	-	lncRNA	-
ENSMUST00000302515.1	Mir9-2hg-314	879	No protein	-	lncRNA	-
ENSMUST00000302504.1	Mir9-2hg-303	851	No protein	-	lncRNA	-
ENSMUST00000302514.1	Mir9-2hg-313	850	No protein	-	lncRNA	-
ENSMUST00000302509.1	Mir9-2hg-308	814	No protein	-	lncRNA	-
ENSMUST00000302471.1	Mir9-2hg-271	810	No protein	-	lncRNA	-
ENSMUST00000302505.1	Mir9-2hg-304	778	No protein	-	lncRNA	-
ENSMUST00000245412.2	Mir9-2hg-231	777	No protein	-	lncRNA	-
ENSMUST00000302518.1	Mir9-2hg-317	753	No protein	-	lncRNA	-
ENSMUST00000302545.1	Mir9-2hg-344	700	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000302533.1	Mir9-2hg-332	696	No protein	-	lncRNA	-
ENSMUST00000302478.1	Mir9-2hg-278	690	No protein	-	lncRNA	-
ENSMUST00000302477.1	Mir9-2hg-277	680	No protein	-	lncRNA	-
ENSMUST00000302474.1	Mir9-2hg-274	611	No protein	-	lncRNA	-
ENSMUST00000302479.1	Mir9-2hg-279	611	No protein	-	lncRNA	-
ENSMUST00000302480.1	Mir9-2hg-280	610	No protein	-	lncRNA	-
ENSMUST00000302535.1	Mir9-2hg-334	605	No protein	-	lncRNA	-
ENSMUST00000302532.1	Mir9-2hg-331	604	No protein	-	lncRNA	-
ENSMUST00000302482.1	Mir9-2hg-282	602	No protein	-	lncRNA	-
ENSMUST00000302550.1	Mir9-2hg-349	588	No protein	-	lncRNA	-
ENSMUST00000302481.1	Mir9-2hg-281	579	No protein	-	lncRNA	-
ENSMUST00000302547.1	Mir9-2hg-346	563	No protein	-	lncRNA	-
ENSMUST00000302551.1	Mir9-2hg-350	552	No protein	-	lncRNA	-
ENSMUST00000302473.1	Mir9-2hg-273	538	No protein	-	lncRNA	-
ENSMUST00000302496.1	Mir9-2hg-296	530	No protein	-	lncRNA	-
ENSMUST00000302484.1	Mir9-2hg-284	527	No protein	-	lncRNA	-
ENSMUST00000242301.2	Mir9-2hg-210	518	No protein	-	lncRNA	-
ENSMUST00000302497.1	Mir9-2hg-297	516	No protein	-	lncRNA	-
ENSMUST00000302483.1	Mir9-2hg-283	514	No protein	-	lncRNA	-
ENSMUST00000302512.1	Mir9-2hg-311	483	No protein	-	lncRNA	-
ENSMUST00000302513.1	Mir9-2hg-312	469	No protein	-	lncRNA	-
ENSMUST00000302490.1	Mir9-2hg-290	438	No protein	-	lncRNA	-
ENSMUST00000302559.1	Mir9-2hg-358	414	No protein	-	lncRNA	-
ENSMUST00000302546.1	Mir9-2hg-345	400	No protein	-	lncRNA	-
ENSMUST00000302560.1	Mir9-2hg-359	372	No protein	-	lncRNA	-
ENSMUST00000242598.2	Mir9-2hg-215	366	No protein	-	lncRNA	-
ENSMUST00000302493.1	Mir9-2hg-293	348	No protein	-	lncRNA	-
ENSMUST00000302548.1	Mir9-2hg-347	347	No protein	-	lncRNA	-
ENSMUST00000302544.1	Mir9-2hg-343	336	No protein	-	lncRNA	-
ENSMUST00000302563.1	Mir9-2hg-362	335	No protein	-	lncRNA	-
ENSMUST00000302540.1	Mir9-2hg-339	299	No protein	-	lncRNA	-
ENSMUST00000302494.1	Mir9-2hg-294	295	No protein	-	lncRNA	-
ENSMUST00000302541.1	Mir9-2hg-340	293	No protein	-	lncRNA	-
ENSMUST00000302539.1	Mir9-2hg-338	263	No protein	-	lncRNA	-
ENSMUST00000245029.1	Mir9-2hg-227	255	No protein	-	lncRNA	-
ENSMUST00000302537.1	Mir9-2hg-336	218	No protein	-	lncRNA	-
ENSMUST00000302542.1	Mir9-2hg-341	216	No protein	-	lncRNA	-
ENSMUST00000302554.1	Mir9-2hg-353	216	No protein	-	lncRNA	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 3,660 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000131907.11

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENSMUST00000131907.11 Mir9-2hg-201

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Transcript: ENSMUST00000131907.11 Mir9-2hg-201

Summary

About Us

Get help

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