Transcript: ENSMUST00000125374.10 Halr1-201

Description

Hoxa adjacent long noncoding RNA 1 [Source:MGI Symbol;Acc:MGI:3705267]

Gene Synonyms

Gm15055, Haunt, Linchoxa1, linc-Hoxa1

Location

Chromosome 6: 52,079,903-52,091,937 forward strand.

About this transcript

This transcript has 3 exons, is associated with 1480 variant alleles and maps to 85 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000085412.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000370137.1	Halr1-210	780	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000155758.4	Halr1-202	3282	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000125374.10	Halr1-201	2846	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000370143.1	Halr1-216	2173	No protein	-	lncRNA	-
ENSMUST00000370153.1	Halr1-226	2089	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000246083.2	Halr1-206	2050	No protein	-	lncRNA	-
ENSMUST00000370140.1	Halr1-213	2006	No protein	-	lncRNA	-
ENSMUST00000189071.9	Halr1-203	1919	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000245217.2	Halr1-205	1740	No protein	-	lncRNA	-
ENSMUST00000370158.1	Halr1-231	1228	No protein	-	lncRNA	-
ENSMUST00000246554.2	Halr1-208	1225	No protein	-	lncRNA	-
ENSMUST00000370151.1	Halr1-224	1158	No protein	-	lncRNA	-
ENSMUST00000370152.1	Halr1-225	1137	No protein	-	lncRNA	-
ENSMUST00000370144.1	Halr1-217	1093	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000370149.1	Halr1-222	1073	No protein	-	lncRNA	-
ENSMUST00000247008.2	Halr1-209	1041	No protein	-	lncRNA	-
ENSMUST00000370154.1	Halr1-227	960	No protein	-	lncRNA	-
ENSMUST00000370148.1	Halr1-221	944	No protein	-	lncRNA	-
ENSMUST00000370147.1	Halr1-220	937	No protein	-	lncRNA	-
ENSMUST00000370150.1	Halr1-223	880	No protein	-	lncRNA	-
ENSMUST00000246466.2	Halr1-207	783	No protein	-	lncRNA	-
ENSMUST00000370146.1	Halr1-219	776	No protein	-	lncRNA	-
ENSMUST00000370157.1	Halr1-230	764	No protein	-	lncRNA	-
ENSMUST00000243504.1	Halr1-204	750	No protein	-	lncRNA	-
ENSMUST00000370155.1	Halr1-228	718	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000370145.1	Halr1-218	688	No protein	-	lncRNA	-
ENSMUST00000370160.1	Halr1-233	605	No protein	-	lncRNA	-
ENSMUST00000370159.1	Halr1-232	582	No protein	-	lncRNA	-
ENSMUST00000370141.1	Halr1-214	578	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000370138.1	Halr1-211	569	No protein	-	lncRNA	-
ENSMUST00000370139.1	Halr1-212	563	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000370142.1	Halr1-215	425	No protein	-	lncRNA	-
ENSMUST00000370156.1	Halr1-229	397	No protein	-	lncRNA	-
ENSMUST00000370161.1	Halr1-234	395	No protein	-	lncRNA	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 2,846 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000125374.10

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENSMUST00000125374.10 Halr1-201

Summary

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Transcript: ENSMUST00000125374.10 Halr1-201

Summary

About Us

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