Transcript: ENSMUST00000118687.8 Efhd1-202

Description

EF hand domain containing 1 [Source:MGI Symbol;Acc:MGI:1921607]

Gene Synonyms

4931430I01Rik, PP3051, mitocalcin

Location

Chromosome 1: 87,192,085-87,238,558 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 3293 variant alleles and maps to 157 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000026255.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000027472.7	Efhd1-201	1854	240aa	ENSMUSP00000027472.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15132	Q9D4J1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000118687.8	Efhd1-202	1726	240aa	ENSMUSP00000112980.2	Nonsense mediated decay	CCDS15132	Q9D4J1	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000150831.2	Efhd1-203	353	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,726 bps, Translation length: 240 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9D4J1

CCDS

This transcript is a member of the Mouse CCDS set: CCDS15132

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000118687.8

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000118687.8 Efhd1-202

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Transcript: ENSMUST00000118687.8 Efhd1-202

Summary

About Us

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