Mouse (GRCm39)
Description

LIM and calponin homology domains 1 [Source:MGI Symbol;Acc:MGI:1924819]

Gene Synonyms

3732412D22Rik

Location
About this transcript

This transcript has 23 exons, is annotated with 40 domains and features, is associated with 8515 variant alleles and maps to 192 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000238785.2Limch1-21974981511aaENSMUSP00000158661.2
 
Protein coding
A0A571BG24 Ensembl CanonicalGENCODE basic
ENSMUST00000238993.2Limch1-2205981927aaENSMUSP00000159044.2
 
Protein coding
A0A5F8MPN3 GENCODE basic
ENSMUST00000038188.14Limch1-2015903901aaENSMUSP00000043163.8
 
Protein coding
CCDS57347Q3UH68-2 GENCODE basicTSL:1
ENSMUST00000101164.11Limch1-20251921057aaENSMUSP00000098723.5
 
Protein coding
CCDS39102Q3UH68 GENCODE basicAPPRIS P1TSL:5
ENSMUST00000118242.8Limch1-20450501068aaENSMUSP00000112732.2
 
Protein coding
D3YU22 GENCODE basicTSL:5
ENSMUST00000119854.8Limch1-2054185774aaENSMUSP00000112651.3
 
Protein coding
D3YU59 TSL:1CDS 5' incomplete
ENSMUST00000117601.8Limch1-2033157898aaENSMUSP00000113544.3
 
Protein coding
D3Z589 GENCODE basicTSL:5
ENSMUST00000132991.5Limch1-209876268aaENSMUSP00000123337.3
 
Protein coding
F6X3N8 TSL:2CDS 3' incomplete
ENSMUST00000127184.8Limch1-207852237aaENSMUSP00000114681.2
 
Protein coding
D3YV55 TSL:5CDS 3' incomplete
ENSMUST00000122812.5Limch1-20652029aaENSMUSP00000144176.2
 
Protein coding
A0A0J9YUH0 TSL:3CDS 3' incomplete
ENSMUST00000153174.2Limch1-21443560aaENSMUSP00000118979.2
 
Nonsense mediated decay
F6W1Y9 TSL:2CDS 5' incomplete
ENSMUST00000130228.2Limch1-20836083aaENSMUSP00000116126.2
 
Nonsense mediated decay
D6RHT2 TSL:5
ENSMUST00000201322.4Limch1-2153356No protein-
 
Protein coding CDS not defined
-TSL:5
ENSMUST00000135334.3Limch1-210735No protein-
 
Protein coding CDS not defined
-TSL:3
ENSMUST00000147050.8Limch1-213624No protein-
 
Protein coding CDS not defined
-TSL:3
ENSMUST00000202830.2Limch1-2182538No protein-
 
Retained intron
-TSL:NA
ENSMUST00000140428.8Limch1-2122458No protein-
 
Retained intron
-TSL:1
ENSMUST00000201852.4Limch1-2161018No protein-
 
Retained intron
-TSL:3
ENSMUST00000202048.2Limch1-217786No protein-
 
Retained intron
-TSL:2
ENSMUST00000137394.2Limch1-211680No protein-
 
Retained intron
-TSL:2
Statistics

Exons: 23, Coding exons: 21, Transcript length: 3,157 bps, Translation length: 898 residues

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000117601.8

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

not organism-supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.