Transcript: ENSMUST00000115175.4 Rhox4d-201

Description

reproductive homeobox 4D [Source:MGI Symbol;Acc:MGI:3613388]

Gene Synonyms

Rhox4.4

Location

Chromosome X: 36,696,012-36,700,829 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 9 domains and features, is associated with 699 variant alleles and maps to 500 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000079633.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000115175.4	Rhox4d-201	936	205aa	ENSMUSP00000110829.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS40935	Q2MDG0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000172476.2	Rhox4d-202	1808	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 936 bps, Translation length: 205 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS40935

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000115175.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000115175.4 Rhox4d-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000115175.4 Rhox4d-201

Summary

About Us

Get help

Our sister sites

Follow us