Transcript: ENSMUST00000115173.5 Rhox2f-201

Description

reproductive homeobox 2F [Source:MGI Symbol;Acc:MGI:3770275]

Gene Synonyms

EG434764, Rhox2.6

Location

Chromosome X: 36,753,058-36,757,816 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 13 domains and features, is associated with 1025 variant alleles and maps to 195 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000095741.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000115173.5	Rhox2f-201	799	191aa	ENSMUSP00000110827.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53057	A2ANE0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000184546.2	Rhox2f-202	488	91aa	ENSMUSP00000139352.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		V9GXW4	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 799 bps, Translation length: 191 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS53057

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000115173.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000115173.5 Rhox2f-201

Summary

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Transcript: ENSMUST00000115173.5 Rhox2f-201

Summary

About Us

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