Transcript: ENSMUST00000113422.9 Hdx-202

Description

highly divergent homeobox [Source:MGI Symbol;Acc:MGI:2685226]

Gene Synonyms

D030011N01Rik

Location

Chromosome X: 110,479,628-110,606,776 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 18 domains and features, is associated with 6840 variant alleles and maps to 176 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000034551.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000113422.9	Hdx-202	9534	692aa	ENSMUSP00000109049.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41105	Q14B70	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000038472.7	Hdx-201	9385	634aa	ENSMUSP00000043482.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS72422	Q14B70-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 9,534 bps, Translation length: 692 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q14B70

CCDS

This transcript is a member of the Mouse CCDS set: CCDS41105

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000113422.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000113422.9 Hdx-202

Summary

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Transcript: ENSMUST00000113422.9 Hdx-202

Summary

About Us

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