Mouse (GRCm39)
Description

LIM homeobox protein 9 [Source:MGI Symbol;Acc:MGI:1316721]

Gene Synonyms

3110009O07Rik, LH2B, Lhx9 alpha

About this transcript

This transcript has 5 exons, is annotated with 26 domains and features, is associated with 997 variant alleles and maps to 178 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000112026.4Lhx9-2042065397aaENSMUSP00000107657.3
 
Protein coding
CCDS35726Q9WUH2 Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENSMUST00000019374.14Lhx9-2014937330aaENSMUSP00000019374.8
 
Protein coding
CCDS15334Q9WUH2-4 GENCODE basicTSL:1
ENSMUST00000112030.9Lhx9-2054633321aaENSMUSP00000107661.3
 
Protein coding
CCDS15333Q9WUH2-2 GENCODE basicTSL:5
ENSMUST00000093486.10Lhx9-2034551321aaENSMUSP00000091198.4
 
Protein coding
CCDS15333Q9WUH2-2 GENCODE basicTSL:1
ENSMUST00000046870.13Lhx9-2023645388aaENSMUSP00000036480.7
 
Protein coding
Q9WUH2-1 GENCODE basicTSL:5
ENSMUST00000194557.2Lhx9-207105875aaENSMUSP00000142268.2
 
Nonsense mediated decay
A0A0A6YY42 TSL:5
ENSMUST00000192425.2Lhx9-2061946No protein-
 
Retained intron
-TSL:NA
Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,065 bps, Translation length: 397 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9WUH2

CCDS

This transcript is a member of the Mouse CCDS set: CCDS35726

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000112026.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

retained intron CDS [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.