Transcript: ENSMUST00000111869.3 Gm3676-201

Description

predicted gene 3676 [Source:MGI Symbol;Acc:MGI:3781852]

Location

Chromosome 14: 41,363,136-41,368,444 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 391 variant alleles and maps to 422 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000079269.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000111869.3	Gm3676-201	899	184aa	ENSMUSP00000107500.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3Z236	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000249603.1	Gm3676-202	1025	120aa	ENSMUSP00000159812.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 899 bps, Translation length: 184 residues

Transcript Support Level (TSL)

TSL:3

Version

ENSMUST00000111869.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000111869.3 Gm3676-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000111869.3 Gm3676-201

Summary

About Us

Get help

Our sister sites

Follow us