Transcript: ENSMUST00000109594.8 Slc1a4-202

Description

solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 [Source:MGI Symbol;Acc:MGI:2135601]

Gene Synonyms

ASCT1

Location

Chromosome 11: 20,252,180-20,282,713 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 34 domains and features, is associated with 2343 variant alleles and maps to 298 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000020142.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000109594.8	Slc1a4-202	3926	532aa	ENSMUSP00000105223.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS24457	O35874 Q3UTP8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000004634.7	Slc1a4-201	3872	452aa	ENSMUSP00000004634.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SSP3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 3,926 bps, Translation length: 532 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O35874

CCDS

This transcript is a member of the Mouse CCDS set: CCDS24457

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000109594.8

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000109594.8 Slc1a4-202

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Transcript: ENSMUST00000109594.8 Slc1a4-202

Summary

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