Transcript: ENSMUST00000107256.4 Rab38-201

Description

RAB38, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1919683]

Gene Synonyms

2310011F14Rik

Location

Chromosome 7: 88,079,481-88,140,780 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 19 domains and features, is associated with 3590 variant alleles and maps to 166 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000030559.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000107256.4	Rab38-201	1577	211aa	ENSMUSP00000102877.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS21439	Q5FW76 Q8QZZ8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000208478.2	Rab38-202	579	121aa	ENSMUSP00000146448.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A140LHK2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,577 bps, Translation length: 211 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8QZZ8

CCDS

This transcript is a member of the Mouse CCDS set: CCDS21439

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000107256.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000107256.4 Rab38-201

Summary

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Transcript: ENSMUST00000107256.4 Rab38-201

Summary

About Us

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