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Mouse (GRCm39)
Description

collagen, type XXV, alpha 1 [Source:MGI Symbol;Acc:MGI:1924268]

Gene Synonyms

2700062B08Rik

About this transcript

This transcript has 35 exons, is annotated with 38 domains and features, is associated with 24534 variant alleles and maps to 303 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000080335.11Col25a1-2012624666aaENSMUSP00000079210.5
 
Protein coding
CCDS38637Q99MQ5 Ensembl CanonicalGENCODE PrimaryGENCODE BasicAPPRIS P1TSL:5
ENSMUST00000106353.2Col25a1-2026701640aaENSMUSP00000101960.2
 
Protein coding
CCDS38636E9Q5L6 GENCODE BasicTSL:5
ENSMUST00000238846.2Col25a1-2072097698aaENSMUSP00000158974.2
 
Protein coding
A0A5F8MPI1 GENCODE Basic
ENSMUST00000183368.8Col25a1-2043778593aaENSMUSP00000138875.2
 
Nonsense mediated decay
V9GWX5 TSL:5
ENSMUST00000197950.2Col25a1-2051078No protein-
 
Protein coding CDS not defined
-TSL:1
ENSMUST00000143830.3Col25a1-2033514No protein-
 
Retained intron
-TSL:5
ENSMUST00000198205.2Col25a1-2062723No protein-
 
Retained intron
-TSL:NA
Statistics

Exons: 35, Coding exons: 35, Transcript length: 6,701 bps, Translation length: 640 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS38636

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000106353.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.