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Mouse (GRCm39)
Description

zinc finger, C3HC type 1 [Source:MGI Symbol;Acc:MGI:1916023]

Gene Synonyms

1110054L24Rik, HSPC216, Nipa

Location
About this transcript

This transcript has 11 exons, is annotated with 13 domains and features, is associated with 1853 variant alleles and maps to 227 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000080812.14Zc3hc1-2011824501aaENSMUSP00000079627.8
 
Protein coding
CCDS80508Q80YV2-1 Ensembl CanonicalGENCODE PrimaryGENCODE BasicAPPRIS P1TSL:1
ENSMUST00000102992.10Zc3hc1-2021865481aaENSMUSP00000100057.4
 
Protein coding
CCDS19970Q80YV2-2 GENCODE BasicTSL:1
ENSMUST00000152391.9Zc3hc1-2101673459aaENSMUSP00000135447.2
 
Protein coding
H3BKM2 GENCODE BasicTSL:5
ENSMUST00000115184.2Zc3hc1-2031504430aaENSMUSP00000110838.2
 
Protein coding
D3Z3D0 GENCODE BasicTSL:5
ENSMUST00000136255.2Zc3hc1-20678749aaENSMUSP00000115433.2
 
Nonsense mediated decay
D3Z0B2 TSL:5
ENSMUST00000147990.2Zc3hc1-20855645aaENSMUSP00000116484.2
 
Nonsense mediated decay
D3Z5A4 TSL:3CDS 5' incomplete
ENSMUST00000126945.8Zc3hc1-204477No protein-
 
Protein coding CDS not defined
-TSL:3
ENSMUST00000152101.2Zc3hc1-2092908No protein-
 
Retained intron
-TSL:1
ENSMUST00000202393.2Zc3hc1-211831No protein-
 
Retained intron
-TSL:NA
ENSMUST00000138983.2Zc3hc1-207447No protein-
 
Retained intron
-TSL:3
ENSMUST00000129796.2Zc3hc1-205362No protein-
 
Retained intron
-TSL:2
Statistics

Exons: 11, Coding exons: 10, Transcript length: 1,865 bps, Translation length: 481 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q80YV2

CCDS

This transcript is a member of the Mouse CCDS set: CCDS19970

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000102992.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

non canonical U12 [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.