Transcript: ENSMUST00000100688.3 4930503E14Rik-201

Description

RIKEN cDNA 4930503E14 gene [Source:MGI Symbol;Acc:MGI:1922204]

Location

Chromosome 14: 44,400,626-44,408,828 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 3 domains and features, is associated with 1446 variant alleles and maps to 302 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000072595.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000100688.3	4930503E14Rik-201	1287	177aa	ENSMUSP00000098254.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36890	Q9D583	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000226164.2	4930503E14Rik-202	696	113aa	ENSMUSP00000154312.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BQR7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000226475.2	4930503E14Rik-203	700	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,287 bps, Translation length: 177 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS36890

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000100688.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000100688.3 4930503E14Rik-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000100688.3 4930503E14Rik-201

Summary

About Us

Get help

Our sister sites

Follow us