Advanced notice of Ensembl Tools maintenance
Please note that due to planned maintenance, Ensembl Tools will be unavailable from Tuesday, September 9, at 08:30 AM BST until Wednesday, September 10, at 08:30 AM BST.
Jobs submitted during the maintenance window will be queued and processed once maintenance is complete. We apologise for the inconvenience.

Mouse (GRCm39)
Description

sodium channel, voltage-gated, type II, alpha [Source:MGI Symbol;Acc:MGI:98248]

Gene Synonyms

A230052E19Rik, Nav1.2, Scn2a1

Location
About this transcript

This transcript has 26 exons, is annotated with 119 domains and features, is associated with 5395 variant alleles and maps to 745 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000200829.4Scn2a-20563482006aaENSMUSP00000143882.2
 
Protein coding
CCDS84529A0A5H1ZRM8 Ensembl CanonicalGENCODE PrimaryGENCODE BasicAPPRIS P1TSL:5
ENSMUST00000028377.14Scn2a-20189352006aaENSMUSP00000028377.8
 
Protein coding
CCDS38130B1AWN6 GENCODE BasicTSL:5
ENSMUST00000100067.7Scn2a-20286902006aaENSMUSP00000097645.4
 
Protein coding
CCDS38130B1AWN6 GENCODE BasicTSL:5
ENSMUST00000144254.6Scn2a-2041810504aaENSMUSP00000117955.4
 
Protein coding
F7AMU5 TSL:5CDS 3' incomplete
ENSMUST00000239325.2Scn2a-2101921470aaENSMUSP00000159244.2
 
Nonsense mediated decay
A0A668KM74 CDS 5' incomplete
ENSMUST00000202508.4Scn2a-208576106aaENSMUSP00000143958.2
 
Nonsense mediated decay
A9JQD3 TSL:1CDS 5' incomplete
ENSMUST00000202162.2Scn2a-20751399aaENSMUSP00000143888.2
 
Nonsense mediated decay
A0A0J9YTX0 TSL:5CDS 5' incomplete
ENSMUST00000201378.2Scn2a-2062454No protein-
 
Retained intron
-TSL:NA
ENSMUST00000202653.2Scn2a-2091482No protein-
 
Retained intron
-TSL:1
ENSMUST00000138368.2Scn2a-203698No protein-
 
Retained intron
-TSL:2
Statistics

Exons: 26, Coding exons: 26, Transcript length: 8,690 bps, Translation length: 2,006 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: B1AWN6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS38130

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000100067.7

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.