Transcript: ENSMUST00000099486.4 Lcmt2-201

Description

leucine carboxyl methyltransferase 2 [Source:MGI Symbol;Acc:MGI:1353659]

Gene Synonyms

Tyw4

Location

Chromosome 2: 120,958,460-120,970,859 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 9 domains and features, is associated with 1033 variant alleles and maps to 118 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000074890.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000110674.4	Lcmt2-202	3056	686aa	ENSMUSP00000106302.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50682	Q8BYR1-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000546783.1	Lcmt2-203	2685	669aa	ENSMUSP00000325146.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000099486.4	Lcmt2-201	2375	441aa	ENSMUSP00000097085.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2ARU0	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 2,375 bps, Translation length: 441 residues

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000099486.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENSMUST00000099486.4 Lcmt2-201

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Transcript: ENSMUST00000099486.4 Lcmt2-201

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