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Mouse (GRCm39)
Description

methyl-CpG binding domain protein 1 [Source:MGI Symbol;Acc:MGI:1333811]

Gene Synonyms

Cxxc3, PCM1

Location
About this transcript

This transcript has 15 exons, is annotated with 21 domains and features, is associated with 903 variant alleles and maps to 353 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000224047.3Mbd1-2023571644aaENSMUSP00000153428.2
 
Protein coding
A0A286YDI1 Ensembl CanonicalGENCODE PrimaryGENCODE BasicAPPRIS ALT2
ENSMUST00000492192.1Mbd1-2206721632aaENSMUSP00000270555.1
 
Protein coding
-GENCODE BasicAPPRIS ALT2
ENSMUST00000492198.1Mbd1-2266308494aaENSMUSP00000270561.1
 
Protein coding
-GENCODE Basic
ENSMUST00000492228.1Mbd1-2565339641aaENSMUSP00000270591.1
 
Protein coding
-GENCODE BasicAPPRIS ALT2
ENSMUST00000492230.1Mbd1-2585291657aaENSMUSP00000270593.1
 
Protein coding
-GENCODE PrimaryGENCODE BasicAPPRIS ALT2
ENSMUST00000492225.1Mbd1-2535274633aaENSMUSP00000270588.1
 
Protein coding
-GENCODE BasicAPPRIS ALT2
ENSMUST00000557868.1Mbd1-2765272632aaENSMUSP00000336231.1
 
Protein coding
-GENCODE BasicAPPRIS ALT2
ENSMUST00000492226.1Mbd1-2545087571aaENSMUSP00000270589.1
 
Protein coding
-GENCODE BasicAPPRIS ALT2
ENSMUST00000492231.1Mbd1-2595005550aaENSMUSP00000270594.1
 
Protein coding
-GENCODE BasicAPPRIS ALT2
ENSMUST00000492242.1Mbd1-2704797474aaENSMUSP00000270605.1
 
Protein coding
-GENCODE Basic
ENSMUST00000557869.1Mbd1-2774660428aaENSMUSP00000336232.1
 
Protein coding
-GENCODE Basic
ENSMUST00000224332.2Mbd1-2043920467aaENSMUSP00000153085.2
 
Protein coding
A0A286YCP6 CDS 5' incomplete
ENSMUST00000492224.1Mbd1-2523693644aaENSMUSP00000270587.1
 
Protein coding
-GENCODE BasicAPPRIS ALT2
ENSMUST00000492197.1Mbd1-2253646669aaENSMUSP00000270560.1
 
Protein coding
-GENCODE BasicAPPRIS ALT2
ENSMUST00000492202.1Mbd1-2303643668aaENSMUSP00000270565.1
 
Protein coding
-GENCODE BasicAPPRIS ALT2
ENSMUST00000492184.1Mbd1-2123596633aaENSMUSP00000270547.1
 
Protein coding
-GENCODE BasicAPPRIS ALT2
ENSMUST00000492220.1Mbd1-2483594632aaENSMUSP00000270583.1
 
Protein coding
-GENCODE BasicAPPRIS ALT2
ENSMUST00000492182.1Mbd1-2103568643aaENSMUSP00000270545.1
 
Protein coding
-GENCODE BasicAPPRIS ALT2
ENSMUST00000492211.1Mbd1-2393543626aaENSMUSP00000270574.1
 
Protein coding
-GENCODE PrimaryGENCODE BasicAPPRIS ALT2
ENSMUST00000492214.1Mbd1-2423538633aaENSMUSP00000270577.1
 
Protein coding
-GENCODE Basic
ENSMUST00000239157.3Mbd1-2073478613aaENSMUSP00000159055.2
 
Protein coding
A0A5F8MPN9 GENCODE Basic
ENSMUST00000492222.1Mbd1-2503442601aaENSMUSP00000270585.1
 
Protein coding
-GENCODE BasicAPPRIS ALT2
ENSMUST00000492190.1Mbd1-2183428577aaENSMUSP00000270553.1
 
Protein coding
-GENCODE Basic
ENSMUST00000492183.1Mbd1-2113417574aaENSMUSP00000270546.1
 
Protein coding
-GENCODE Basic
ENSMUST00000097530.6Mbd1-2013403588aaENSMUSP00000095137.4
 
Protein coding
CCDS50321A0A0R4J159 GENCODE PrimaryGENCODE BasicTSL:1
ENSMUST00000492215.1Mbd1-2433385582aaENSMUSP00000270578.1
 
Protein coding
-GENCODE BasicAPPRIS ALT2
ENSMUST00000492201.1Mbd1-2293322561aaENSMUSP00000270564.1
 
Protein coding
-GENCODE PrimaryGENCODE BasicAPPRIS P2
ENSMUST00000492206.1Mbd1-2343292551aaENSMUSP00000270569.1
 
Protein coding
-GENCODE Basic
ENSMUST00000492195.1Mbd1-2233274545aaENSMUSP00000270558.1
 
Protein coding
-GENCODE Basic
ENSMUST00000492203.1Mbd1-2313274545aaENSMUSP00000270566.1
 
Protein coding
-GENCODE Basic
ENSMUST00000557865.1Mbd1-2733154505aaENSMUSP00000336228.1
 
Protein coding
-GENCODE Basic
ENSMUST00000492235.1Mbd1-2633115576aaENSMUSP00000270598.1
 
Protein coding
-GENCODE Basic
ENSMUST00000492217.1Mbd1-2453094485aaENSMUSP00000270580.1
 
Protein coding
-GENCODE Basic
ENSMUST00000557867.1Mbd1-2753001626aaENSMUSP00000336230.1
 
Protein coding
-GENCODE BasicAPPRIS ALT2
ENSMUST00000492221.1Mbd1-2492956439aaENSMUSP00000270584.1
 
Protein coding
-GENCODE Basic
ENSMUST00000557870.1Mbd1-278103352aaENSMUSP00000336233.1
 
Protein coding
-GENCODE PrimaryGENCODE Basic
ENSMUST00000492210.1Mbd1-238893685aaENSMUSP00000270573.1
 
Nonsense mediated decay
--
ENSMUST00000492207.1Mbd1-235740885aaENSMUSP00000270570.1
 
Nonsense mediated decay
--
ENSMUST00000492213.1Mbd1-241731785aaENSMUSP00000270576.1
 
Nonsense mediated decay
--
ENSMUST00000492196.1Mbd1-2246071536aaENSMUSP00000270559.1
 
Nonsense mediated decay
--
ENSMUST00000492212.1Mbd1-2406052158aaENSMUSP00000270575.1
 
Nonsense mediated decay
--
ENSMUST00000492187.1Mbd1-215604185aaENSMUSP00000270550.1
 
Nonsense mediated decay
--
ENSMUST00000492234.1Mbd1-262543085aaENSMUSP00000270597.1
 
Nonsense mediated decay
--
ENSMUST00000492236.1Mbd1-264538585aaENSMUSP00000270599.1
 
Nonsense mediated decay
--
ENSMUST00000492243.1Mbd1-271533285aaENSMUSP00000270606.1
 
Nonsense mediated decay
--
ENSMUST00000492227.1Mbd1-2554781335aaENSMUSP00000270590.1
 
Nonsense mediated decay
--
ENSMUST00000557866.1Mbd1-274470744aaENSMUSP00000336229.1
 
Nonsense mediated decay
--
ENSMUST00000492232.1Mbd1-2604706628aaENSMUSP00000270595.1
 
Nonsense mediated decay
--
ENSMUST00000492229.1Mbd1-257462585aaENSMUSP00000270592.1
 
Nonsense mediated decay
--
ENSMUST00000492240.1Mbd1-268455185aaENSMUSP00000270603.1
 
Nonsense mediated decay
--
ENSMUST00000492241.1Mbd1-269454085aaENSMUSP00000270604.1
 
Nonsense mediated decay
--
ENSMUST00000492239.1Mbd1-2674507572aaENSMUSP00000270602.1
 
Nonsense mediated decay
--
ENSMUST00000492237.1Mbd1-265446985aaENSMUSP00000270600.1
 
Nonsense mediated decay
--
ENSMUST00000492233.1Mbd1-261444385aaENSMUSP00000270596.1
 
Nonsense mediated decay
--
ENSMUST00000492238.1Mbd1-2664362480aaENSMUSP00000270601.1
 
Nonsense mediated decay
--
ENSMUST00000492244.1Mbd1-272427285aaENSMUSP00000270607.1
 
Nonsense mediated decay
--
ENSMUST00000492181.1Mbd1-209354455aaENSMUSP00000270544.1
 
Nonsense mediated decay
--
ENSMUST00000492180.1Mbd1-208345585aaENSMUSP00000270543.1
 
Nonsense mediated decay
--
ENSMUST00000492209.1Mbd1-2373246577aaENSMUSP00000270572.1
 
Nonsense mediated decay
--
ENSMUST00000492219.1Mbd1-247301385aaENSMUSP00000270582.1
 
Nonsense mediated decay
--
ENSMUST00000492186.1Mbd1-214295044aaENSMUSP00000270549.1
 
Nonsense mediated decay
--
ENSMUST00000492194.1Mbd1-2222933158aaENSMUSP00000270557.1
 
Nonsense mediated decay
--
ENSMUST00000492191.1Mbd1-219290785aaENSMUSP00000270554.1
 
Nonsense mediated decay
--
ENSMUST00000492188.1Mbd1-2162897536aaENSMUSP00000270551.1
 
Nonsense mediated decay
--
ENSMUST00000492223.1Mbd1-2512836335aaENSMUSP00000270586.1
 
Nonsense mediated decay
--
ENSMUST00000492200.1Mbd1-2282828360aaENSMUSP00000270563.1
 
Nonsense mediated decay
--
ENSMUST00000492205.1Mbd1-233282085aaENSMUSP00000270568.1
 
Nonsense mediated decay
--
ENSMUST00000492193.1Mbd1-221275944aaENSMUSP00000270556.1
 
Nonsense mediated decay
--
ENSMUST00000492189.1Mbd1-217275585aaENSMUSP00000270552.1
 
Nonsense mediated decay
--
ENSMUST00000492199.1Mbd1-2272738158aaENSMUSP00000270562.1
 
Nonsense mediated decay
--
ENSMUST00000492208.1Mbd1-236273885aaENSMUSP00000270571.1
 
Nonsense mediated decay
--
ENSMUST00000492185.1Mbd1-213267585aaENSMUSP00000270548.1
 
Nonsense mediated decay
--
ENSMUST00000492216.1Mbd1-244265185aaENSMUSP00000270579.1
 
Nonsense mediated decay
--
ENSMUST00000492218.1Mbd1-2462605445aaENSMUSP00000270581.1
 
Nonsense mediated decay
--
ENSMUST00000492204.1Mbd1-232257185aaENSMUSP00000270567.1
 
Nonsense mediated decay
--
ENSMUST00000224907.2Mbd1-2051349No protein-
 
Retained intron
--
ENSMUST00000224159.2Mbd1-2031145No protein-
 
Retained intron
--
ENSMUST00000237568.2Mbd1-206796No protein-
 
Retained intron
--
Statistics

Exons: 15, Coding exons: 14, Transcript length: 3,403 bps, Translation length: 588 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS50321

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000097530.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.