Transcript: ENSMUST00000096554.12 Apcdd1-201

Description

adenomatosis polyposis coli down-regulated 1 [Source:MGI Symbol;Acc:MGI:3513977]

Gene Synonyms

Drapc1, EIG180

Location

Chromosome 18: 63,055,400-63,085,535 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 17 domains and features, is associated with 1866 variant alleles and maps to 93 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000071847.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000236135.2	Apcdd1-202	10879	514aa	ENSMUSP00000157539.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37843	Q3U128	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000096554.12	Apcdd1-201	1842	514aa	ENSMUSP00000094302.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37843	Q3U128	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237428.2	Apcdd1-204	845	35aa	ENSMUSP00000157618.2	Nonsense mediated decay		A0A494B9H9	-
ENSMUST00000236605.2	Apcdd1-203	2189	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,842 bps, Translation length: 514 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q3U128

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37843

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000096554.12

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000096554.12 Apcdd1-201

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Transcript: ENSMUST00000096554.12 Apcdd1-201

Summary

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