Transcript: ENSMUST00000090543.6 Nr1d2-201

Description

nuclear receptor subfamily 1, group D, member 2 [Source:MGI Symbol;Acc:MGI:2449205]

Gene Synonyms

RVR, Rev-erb beta

Location

Chromosome 14: 4,230,569-4,265,642 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 34 domains and features, is associated with 1782 variant alleles and maps to 293 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000021775.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000090543.6	Nr1d2-201	4663	576aa	ENSMUSP00000088031.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36811	Q4VAB7 Q60674	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000225491.2	Nr1d2-204	737	175aa	ENSMUSP00000153325.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YD98	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000143308.2	Nr1d2-202	1680	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000225308.2	Nr1d2-203	687	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 4,663 bps, Translation length: 576 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q60674

CCDS

This transcript is a member of the Mouse CCDS set: CCDS36811

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000090543.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000090543.6 Nr1d2-201

Summary

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Transcript: ENSMUST00000090543.6 Nr1d2-201

Summary

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