Transcript: ENSMUST00000089378.5 Pdxp-201

Description

pyridoxal (pyridoxine, vitamin B6) phosphatase [Source:MGI Symbol;Acc:MGI:1919282]

Gene Synonyms

1600027H05Rik, Chronophin, PLP-phosophatase, chronophilin

Location

Chromosome 15: 78,798,119-78,803,717 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 33 domains and features, is associated with 790 variant alleles and maps to 187 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000116165.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000089378.5	Pdxp-201	2001	292aa	ENSMUSP00000086796.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27627	P60487	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000480717.1	Pdxp-203	2070	315aa	ENSMUSP00000259080.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000480716.1	Pdxp-202	2227	214aa	ENSMUSP00000259079.1	Nonsense mediated decay		-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 2,001 bps, Translation length: 292 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P60487

CCDS

This transcript is a member of the Mouse CCDS set: CCDS27627

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000089378.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000089378.5 Pdxp-201

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Transcript: ENSMUST00000089378.5 Pdxp-201

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