Transcript: ENSMUST00000089129.7 Cyp2d9-201

Description

cytochrome P450, family 2, subfamily d, polypeptide 9 [Source:MGI Symbol;Acc:MGI:88606]

Gene Synonyms

Cyp2d, P450-2D, testosterone 16alpha-hydroxylase

Location

Chromosome 15: 82,336,535-82,341,046 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 25 domains and features, is associated with 925 variant alleles and maps to 275 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000068086.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000089129.7	Cyp2d9-201	1712	504aa	ENSMUSP00000086530.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27691	P11714	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000231136.2	Cyp2d9-209	820	254aa	ENSMUSP00000155611.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8W6Y8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000230024.2	Cyp2d9-207	719	206aa	ENSMUSP00000155373.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHS2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000230000.2	Cyp2d9-206	625	208aa	ENSMUSP00000155410.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHT2	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000229793.2	Cyp2d9-205	550	103aa	ENSMUSP00000155726.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VI52	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000229313.2	Cyp2d9-203	534	158aa	ENSMUSP00000155000.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHD8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000230191.2	Cyp2d9-208	1478	294aa	ENSMUSP00000155496.2	Nonsense mediated decay		A0A2R8VHW1	-
ENSMUST00000229473.2	Cyp2d9-204	758	53aa	ENSMUSP00000154879.2	Nonsense mediated decay		A0A2R8VHA0	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000229181.2	Cyp2d9-202	1255	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,712 bps, Translation length: 504 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P11714

CCDS

This transcript is a member of the Mouse CCDS set: CCDS27691

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000089129.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000089129.7 Cyp2d9-201

Summary

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Transcript: ENSMUST00000089129.7 Cyp2d9-201

Summary

About Us

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