Transcript: ENSMUST00000088779.5 Rtl8a-201

Description

retrotransposon Gag like 8A [Source:MGI Symbol;Acc:MGI:1913408]

Gene Synonyms

1110012O05Rik, Cxx1a, Mar8.2A/B, Mart8b

Location

About this transcript

This transcript has 1 exon, is annotated with 3 domains and features, is associated with 603 variant alleles and maps to 204 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000088779.5	Rtl8a-201	1195	113aa	ENSMUSP00000086158.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30134	Q9D1F0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 1,195 bps, Translation length: 113 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS30134

Transcript Support Level (TSL)

TSL:NA

Version

ENSMUST00000088779.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.