Transcript: ENSMUST00000087351.9 Hnrnpa1-202

Description

heterogeneous nuclear ribonucleoprotein A1 [Source:MGI Symbol;Acc:MGI:104820]

Gene Synonyms

D15Ertd119e, Hdp, Hnrpa1, hnrnp-A

Location

Chromosome 15: 103,148,881-103,153,382 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 23 domains and features, is associated with 615 variant alleles and maps to 650 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000046434.17 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000087351.9	Hnrnpa1-202	1737	320aa	ENSMUSP00000084609.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37233	P49312-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000036004.16	Hnrnpa1-201	1918	373aa	ENSMUSP00000042658.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37232	Q5EBP8	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000231141.2	Hnrnpa1-205	1541	268aa	ENSMUSP00000155311.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P49312-2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000230489.2	Hnrnpa1-204	3118	373aa	ENSMUSP00000154865.2	Nonsense mediated decay	CCDS37232	Q5EBP8	-
ENSMUST00000230171.2	Hnrnpa1-203	1283	320aa	ENSMUSP00000155833.2	Nonsense mediated decay	CCDS37233	P49312-1	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 1,737 bps, Translation length: 320 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P49312

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37233

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000087351.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000087351.9 Hnrnpa1-202

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Transcript: ENSMUST00000087351.9 Hnrnpa1-202

Summary

About Us

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