Transcript: ENSMUST00000082337.13 Mdc1-201

Description

mediator of DNA damage checkpoint 1 [Source:MGI Symbol;Acc:MGI:3525201]

Gene Synonyms

NFBD1

Location

Chromosome 17: 36,152,407-36,170,562 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 63 domains and features, is associated with 1341 variant alleles and maps to 299 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000061607.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000082337.13	Mdc1-201	7335	1708aa	ENSMUSP00000080949.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37604	E9QK89	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000225192.2	Mdc1-203	649	216aa	ENSMUSP00000153197.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YCY4	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000174124.2	Mdc1-202	422	109aa	ENSMUSP00000133568.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3UX64	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 16, Coding exons: 15, Transcript length: 7,335 bps, Translation length: 1,708 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37604

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000082337.13

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000082337.13 Mdc1-201

Summary

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Transcript: ENSMUST00000082337.13 Mdc1-201

Summary

About Us

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