Transcript: ENSMUST00000080713.5 Utp14a-201

Description

UTP14A small subunit processome component [Source:MGI Symbol;Acc:MGI:1919804]

Gene Synonyms

2700066J21Rik, NY-CO-16, SDCCAG16

Location

Chromosome X: 47,345,739-47,371,330 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 19 domains and features, is associated with 2203 variant alleles and maps to 242 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000063785.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000080713.5	Utp14a-201	2507	767aa	ENSMUSP00000079538.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30107	Q640M1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000125966.8	Utp14a-202	2138	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000152624.2	Utp14a-203	813	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 2,507 bps, Translation length: 767 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q640M1

CCDS

This transcript is a member of the Mouse CCDS set: CCDS30107

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000080713.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000080713.5 Utp14a-201

Summary

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Transcript: ENSMUST00000080713.5 Utp14a-201

Summary

About Us

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