Transcript: ENSMUST00000079618.11 St8sia5-202

Description

ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 [Source:MGI Symbol;Acc:MGI:109243]

Gene Synonyms

ST8SiaV, Siat8e

Location

Chromosome 18: 77,273,549-77,343,146 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 6 domains and features, is associated with 4617 variant alleles and maps to 216 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000025425.19 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000075290.8	St8sia5-201	5432	412aa	ENSMUSP00000074764.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50325	P70126	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000079618.11	St8sia5-202	1989	376aa	ENSMUSP00000078566.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29353	P70126-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000236592.2	St8sia5-203	634	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,989 bps, Translation length: 376 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P70126

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29353

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000079618.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000079618.11 St8sia5-202

Summary

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Transcript: ENSMUST00000079618.11 St8sia5-202

Summary

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