Transcript: ENSMUST00000078482.13 Dchs1-201

Description

dachsous cadherin related 1 [Source:MGI Symbol;Acc:MGI:2685011]

Gene Synonyms

3110041P15Rik, C130033F22Rik

Location

Chromosome 7: 105,402,197-105,436,861 reverse strand.

About this transcript

This transcript has 21 exons, is annotated with 200 domains and features, is associated with 1645 variant alleles and maps to 311 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000036862.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000078482.13	Dchs1-201	10754	3291aa	ENSMUSP00000077574.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS52351	E9PVD3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000140959.2	Dchs1-202	743	50aa	ENSMUSP00000147857.2	Nonsense mediated decay		A0A1B0GSA3	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000154659.2	Dchs1-203	4073	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 21, Coding exons: 20, Transcript length: 10,754 bps, Translation length: 3,291 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: E9PVD3

CCDS

This transcript is a member of the Mouse CCDS set: CCDS52351

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000078482.13

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000078482.13 Dchs1-201

Summary

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Transcript: ENSMUST00000078482.13 Dchs1-201

Summary

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