Transcript: ENSMUST00000076169.4 Mtx3-201

Description

metaxin 3 [Source:MGI Symbol;Acc:MGI:2686040]

Gene Synonyms

4930470O13Rik, Gm6514, LOC382793

Location

Chromosome 13: 92,981,295-92,994,738 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 11 domains and features, is associated with 1002 variant alleles and maps to 314 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000021704.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000076169.4	Mtx3-201	6275	312aa	ENSMUSP00000075526.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49328	D3YTP3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000224368.2	Mtx3-203	435	68aa	ENSMUSP00000153602.2	Nonsense mediated decay		A0A286YDW3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000223719.2	Mtx3-202	1810	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 6,275 bps, Translation length: 312 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS49328

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000076169.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

inferred exon combination [Definitions]

not organism-supported

RNA-Seq supported partial

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000076169.4 Mtx3-201

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Transcript: ENSMUST00000076169.4 Mtx3-201

Summary

About Us

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