Transcript: ENSMUST00000070328.10 Sh2d4b-201

Description

SH2 domain containing 4B [Source:MGI Symbol;Acc:MGI:1925182]

Gene Synonyms

A430109M18Rik

Location

Chromosome 14: 40,535,746-40,575,262 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 11 domains and features, is associated with 2418 variant alleles and maps to 115 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000037833.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000096000.4	Sh2d4b-202	1597	431aa	ENSMUSP00000093699.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26955	A6X942	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000070328.10	Sh2d4b-201	3086	178aa	ENSMUSP00000064708.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6X942-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000225854.2	Sh2d4b-203	1150	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 3,086 bps, Translation length: 178 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A6X942

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000070328.10

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000070328.10 Sh2d4b-201

Summary

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Transcript: ENSMUST00000070328.10 Sh2d4b-201

Summary

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