Transcript: ENSMUST00000068853.13 Fat2-201

Description

FAT atypical cadherin 2 [Source:MGI Symbol;Acc:MGI:2685369]

Gene Synonyms

EMI2, Fath2, LOC245827, mKIAA0811

Location

Chromosome 11: 55,141,435-55,227,390 reverse strand.

About this transcript

This transcript has 24 exons, is annotated with 241 domains and features, is associated with 4833 variant alleles and maps to 372 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000055333.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000068853.13	Fat2-201	14528	4351aa	ENSMUSP00000067556.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36157	Q5F226	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000108864.2	Fat2-202	14423	4351aa	ENSMUSP00000104492.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36157	Q5F226	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 24, Coding exons: 23, Transcript length: 14,528 bps, Translation length: 4,351 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5F226

CCDS

This transcript is a member of the Mouse CCDS set: CCDS36157

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000068853.13

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000068853.13 Fat2-201

Summary

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Transcript: ENSMUST00000068853.13 Fat2-201

Summary

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