Transcript: ENSMUST00000064941.7 Nr1d1-201

Description

nuclear receptor subfamily 1, group D, member 1 [Source:MGI Symbol;Acc:MGI:2444210]

Gene Synonyms

A530070C09Rik, REV-ERBalpha, rev-erbA(alpha)

Location

Chromosome 11: 98,658,758-98,666,159 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 38 domains and features, is associated with 756 variant alleles and maps to 209 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000020889.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000064941.7	Nr1d1-201	2721	615aa	ENSMUSP00000069505.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS25363	Q3UV55	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000528055.1	Nr1d1-203	2879	62aa	ENSMUSP00000306418.1	Nonsense mediated decay		-	-
ENSMUST00000528056.1	Nr1d1-204	2659	170aa	ENSMUSP00000306419.1	Nonsense mediated decay		-	-
ENSMUST00000528057.1	Nr1d1-205	2100	247aa	ENSMUSP00000306420.1	Nonsense mediated decay		-	-
ENSMUST00000139220.2	Nr1d1-202	781	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 2,721 bps, Translation length: 615 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q3UV55

CCDS

This transcript is a member of the Mouse CCDS set: CCDS25363

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000064941.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

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Transcript: ENSMUST00000064941.7 Nr1d1-201

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Transcript: ENSMUST00000064941.7 Nr1d1-201

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