Transcript: ENSMUST00000064765.7 Stx17-201

Description

syntaxin 17 [Source:MGI Symbol;Acc:MGI:1914977]

Gene Synonyms

4833418L03Rik, 6330411F21Rik, 9030425C21Rik

Location

Chromosome 4: 48,124,915-48,182,231 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 19 domains and features, is associated with 2849 variant alleles and maps to 200 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000061455.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000107720.10	Stx17-202	5781	301aa	ENSMUSP00000103348.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS18164	Q9D0I4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000443632.1	Stx17-206	2108	203aa	ENSMUSP00000221995.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000107721.8	Stx17-203	1771	276aa	ENSMUSP00000103349.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9D614	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000064765.7	Stx17-201	1551	301aa	ENSMUSP00000068087.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS18164	Q9D0I4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000153502.8	Stx17-204	618	137aa	ENSMUSP00000117512.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AVI2	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000582301.1	Stx17-222	391	30aa	ENSMUSP00000360666.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000443635.1	Stx17-209	6102	45aa	ENSMUSP00000221998.1	Nonsense mediated decay		-	-
ENSMUST00000443631.1	Stx17-205	6039	45aa	ENSMUSP00000221994.1	Nonsense mediated decay		-	-
ENSMUST00000443636.1	Stx17-210	6007	45aa	ENSMUSP00000221999.1	Nonsense mediated decay		-	-
ENSMUST00000443634.1	Stx17-208	5968	108aa	ENSMUSP00000221997.1	Nonsense mediated decay		-	-
ENSMUST00000443633.1	Stx17-207	5927	45aa	ENSMUSP00000221996.1	Nonsense mediated decay		-	-
ENSMUST00000443637.1	Stx17-211	4306	108aa	ENSMUSP00000222000.1	Nonsense mediated decay		-	-
ENSMUST00000443639.1	Stx17-213	2751	44aa	ENSMUSP00000222002.1	Nonsense mediated decay		-	-
ENSMUST00000443642.1	Stx17-216	2636	66aa	ENSMUSP00000222005.1	Nonsense mediated decay		-	-
ENSMUST00000443641.1	Stx17-215	2618	45aa	ENSMUSP00000222004.1	Nonsense mediated decay		-	-
ENSMUST00000443638.1	Stx17-212	2565	45aa	ENSMUSP00000222001.1	Nonsense mediated decay		-	-
ENSMUST00000443640.1	Stx17-214	2446	45aa	ENSMUSP00000222003.1	Nonsense mediated decay		-	-
ENSMUST00000443645.1	Stx17-219	2212	44aa	ENSMUSP00000222008.1	Nonsense mediated decay		-	-
ENSMUST00000443646.1	Stx17-220	1984	45aa	ENSMUSP00000222009.1	Nonsense mediated decay		-	-
ENSMUST00000443643.1	Stx17-217	1941	108aa	ENSMUSP00000222006.1	Nonsense mediated decay		-	-
ENSMUST00000443644.1	Stx17-218	1839	156aa	ENSMUSP00000222007.1	Nonsense mediated decay		-	-
ENSMUST00000574974.1	Stx17-221	1711	129aa	ENSMUSP00000353337.1	Nonsense mediated decay		-	-

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 1,551 bps, Translation length: 301 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9D0I4

CCDS

This transcript is a member of the Mouse CCDS set: CCDS18164

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000064765.7

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000064765.7 Stx17-201

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Transcript: ENSMUST00000064765.7 Stx17-201

Summary

About Us

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