Transcript: ENSMUST00000063340.12 Rhox2a-201

Description

reproductive homeobox 2A [Source:MGI Symbol;Acc:MGI:1922449]

Gene Synonyms

4930539I12Rik, Rhox2

Location

Chromosome X: 36,508,629-36,513,339 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 13 domains and features, is associated with 297 variant alleles and maps to 314 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000051827.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000063340.12	Rhox2a-201	795	191aa	ENSMUSP00000067190.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30075	Q9D4Y3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000173650.2	Rhox2a-202	735	183aa	ENSMUSP00000134267.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS81118	G3UYY0	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 795 bps, Translation length: 191 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS30075

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000063340.12

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000063340.12 Rhox2a-201

Summary

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Transcript: ENSMUST00000063340.12 Rhox2a-201

Summary

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