Transcript: ENSMUST00000063103.6 1700048O20Rik-201

Description

RIKEN cDNA 1700048O20 gene [Source:MGI Symbol;Acc:MGI:1920637]

Location

Chromosome 9: 121,766,326-121,776,082 forward strand.

About this transcript

This transcript has 4 exons, is associated with 1022 variant alleles and maps to 127 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000043773.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000214777.3	1700048O20Rik-202	1905	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000063103.6	1700048O20Rik-201	2519	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000299488.1	1700048O20Rik-204	2299	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000299489.1	1700048O20Rik-205	2173	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000299490.1	1700048O20Rik-206	1835	No protein	-	lncRNA	-
ENSMUST00000299508.1	1700048O20Rik-224	1626	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000215356.3	1700048O20Rik-203	1596	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000299501.1	1700048O20Rik-217	1326	No protein	-	lncRNA	-
ENSMUST00000299516.1	1700048O20Rik-232	1274	No protein	-	lncRNA	-
ENSMUST00000299514.1	1700048O20Rik-230	1243	No protein	-	lncRNA	-
ENSMUST00000299491.1	1700048O20Rik-207	1104	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000299494.1	1700048O20Rik-210	1063	No protein	-	lncRNA	-
ENSMUST00000299503.1	1700048O20Rik-219	985	No protein	-	lncRNA	-
ENSMUST00000299493.1	1700048O20Rik-209	964	No protein	-	lncRNA	-
ENSMUST00000299492.1	1700048O20Rik-208	952	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000299496.1	1700048O20Rik-212	866	No protein	-	lncRNA	-
ENSMUST00000299500.1	1700048O20Rik-216	820	No protein	-	lncRNA	-
ENSMUST00000299497.1	1700048O20Rik-213	802	No protein	-	lncRNA	-
ENSMUST00000299498.1	1700048O20Rik-214	772	No protein	-	lncRNA	-
ENSMUST00000299504.1	1700048O20Rik-220	734	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000299506.1	1700048O20Rik-222	700	No protein	-	lncRNA	-
ENSMUST00000299505.1	1700048O20Rik-221	683	No protein	-	lncRNA	-
ENSMUST00000299502.1	1700048O20Rik-218	651	No protein	-	lncRNA	-
ENSMUST00000299507.1	1700048O20Rik-223	624	No protein	-	lncRNA	-
ENSMUST00000299495.1	1700048O20Rik-211	610	No protein	-	lncRNA	-
ENSMUST00000299509.1	1700048O20Rik-225	596	No protein	-	lncRNA	-
ENSMUST00000299513.1	1700048O20Rik-229	501	No protein	-	lncRNA	-
ENSMUST00000299512.1	1700048O20Rik-228	475	No protein	-	lncRNA	-
ENSMUST00000299510.1	1700048O20Rik-226	470	No protein	-	lncRNA	-
ENSMUST00000299511.1	1700048O20Rik-227	441	No protein	-	lncRNA	-
ENSMUST00000299515.1	1700048O20Rik-231	426	No protein	-	lncRNA	-
ENSMUST00000299499.1	1700048O20Rik-215	378	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 2,519 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000063103.6

Type

LncRNA

Annotation Method

Long intergenic non-coding RNAs (lincRNAs) were annotated by the Ensembl lincRNA annotation pipeline.

Transcript: ENSMUST00000063103.6 1700048O20Rik-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000063103.6 1700048O20Rik-201

Summary

About Us

Get help

Our sister sites

Follow us