Transcript: ENSMUST00000062458.6 Lsm11-201

Description

U7 snRNP-specific Sm-like protein LSM11 [Source:MGI Symbol;Acc:MGI:1919540]

Gene Synonyms

2210404M20Rik

Location

Chromosome 11: 45,821,907-45,835,762 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 1344 variant alleles and maps to 168 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000044847.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000129820.9	Lsm11-202	6478	361aa	ENSMUSP00000117531.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36131	Q5SUH5 Q8BUV6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000381971.1	Lsm11-203	4241	241aa	ENSMUSP00000160334.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000062458.6	Lsm11-201	2126	361aa	ENSMUSP00000057343.6	Nonsense mediated decay	CCDS36131	Q5SUH5 Q8BUV6	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 2,126 bps, Translation length: 361 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8BUV6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS36131

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000062458.6

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000062458.6 Lsm11-201

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSMUST00000062458.6 Lsm11-201

Summary

About Us

Get help

Our sister sites

Follow us