Transcript: ENSMUST00000062304.7 Lrrc4-201

Description

leucine rich repeat containing 4 [Source:MGI Symbol;Acc:MGI:2182081]

Gene Synonyms

NGL-2, NGL2, Nag14

Location

Chromosome 6: 28,828,132-28,831,746 reverse strand.

About this transcript

This transcript has 1 exon, is annotated with 31 domains and features, is associated with 374 variant alleles and maps to 254 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000049939.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000062304.7	Lrrc4-201	3615	652aa	ENSMUSP00000062158.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS39448	Q99PH1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000171353.2	Lrrc4-202	883	177aa	ENSMUSP00000129497.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PUX8	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 3,615 bps, Translation length: 652 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99PH1

CCDS

This transcript is a member of the Mouse CCDS set: CCDS39448

Transcript Support Level (TSL)

TSL:NA

Version

ENSMUST00000062304.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000062304.7 Lrrc4-201

Summary

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Transcript: ENSMUST00000062304.7 Lrrc4-201

Summary

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