Transcript: ENSMUST00000060396.8 Slc25a46-201

Description

solute carrier family 25, member 46 [Source:MGI Symbol;Acc:MGI:1914703]

Gene Synonyms

1200007B05Rik

Location

Chromosome 18: 31,713,221-31,742,990 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 16 domains and features, is associated with 1753 variant alleles and maps to 278 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024259.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000060396.8	Slc25a46-201	4406	418aa	ENSMUSP00000053325.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29110	Q9CQS4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000394331.1	Slc25a46-207	4401	226aa	ENSMUSP00000172694.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000394334.1	Slc25a46-210	4349	399aa	ENSMUSP00000172697.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000394332.1	Slc25a46-208	4253	174aa	ENSMUSP00000172695.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000394337.1	Slc25a46-213	4201	245aa	ENSMUSP00000172700.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000394338.1	Slc25a46-214	3933	95aa	ENSMUSP00000172701.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000394339.1	Slc25a46-215	3778	148aa	ENSMUSP00000172702.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000394340.1	Slc25a46-216	3712	320aa	ENSMUSP00000172703.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000394343.1	Slc25a46-219	3441	232aa	ENSMUSP00000172706.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000394353.1	Slc25a46-229	3436	233aa	ENSMUSP00000172716.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000394344.1	Slc25a46-220	3353	206aa	ENSMUSP00000172707.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000394355.1	Slc25a46-231	3335	392aa	ENSMUSP00000172718.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000394346.1	Slc25a46-222	3296	190aa	ENSMUSP00000172709.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000394354.1	Slc25a46-230	3197	346aa	ENSMUSP00000172717.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000394358.1	Slc25a46-234	2739	214aa	ENSMUSP00000172721.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000394327.1	Slc25a46-203	1032	259aa	ENSMUSP00000172690.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000394328.1	Slc25a46-204	4550	164aa	ENSMUSP00000172691.1	Nonsense mediated decay		-	-
ENSMUST00000394335.1	Slc25a46-211	4440	96aa	ENSMUSP00000172698.1	Nonsense mediated decay		-	-
ENSMUST00000394333.1	Slc25a46-209	4346	164aa	ENSMUSP00000172696.1	Nonsense mediated decay		-	-
ENSMUST00000394330.1	Slc25a46-206	4344	159aa	ENSMUSP00000172693.1	Nonsense mediated decay		-	-
ENSMUST00000394336.1	Slc25a46-212	4313	96aa	ENSMUSP00000172699.1	Nonsense mediated decay		-	-
ENSMUST00000394329.1	Slc25a46-205	4302	162aa	ENSMUSP00000172692.1	Nonsense mediated decay		-	-
ENSMUST00000394351.1	Slc25a46-227	4078	197aa	ENSMUSP00000172714.1	Nonsense mediated decay		-	-
ENSMUST00000394341.1	Slc25a46-217	3740	96aa	ENSMUSP00000172704.1	Nonsense mediated decay		-	-
ENSMUST00000394356.1	Slc25a46-232	3552	134aa	ENSMUSP00000172719.1	Nonsense mediated decay		-	-
ENSMUST00000394348.1	Slc25a46-224	3456	157aa	ENSMUSP00000172711.1	Nonsense mediated decay		-	-
ENSMUST00000394342.1	Slc25a46-218	3421	131aa	ENSMUSP00000172705.1	Nonsense mediated decay		-	-
ENSMUST00000394357.1	Slc25a46-233	3410	189aa	ENSMUSP00000172720.1	Nonsense mediated decay		-	-
ENSMUST00000394347.1	Slc25a46-223	3402	100aa	ENSMUSP00000172710.1	Nonsense mediated decay		-	-
ENSMUST00000394349.1	Slc25a46-225	3389	192aa	ENSMUSP00000172712.1	Nonsense mediated decay		-	-
ENSMUST00000394350.1	Slc25a46-226	3382	144aa	ENSMUSP00000172713.1	Nonsense mediated decay		-	-
ENSMUST00000394345.1	Slc25a46-221	3305	96aa	ENSMUSP00000172708.1	Nonsense mediated decay		-	-
ENSMUST00000394352.1	Slc25a46-228	3211	136aa	ENSMUSP00000172715.1	Nonsense mediated decay		-	-
ENSMUST00000394367.1	Slc25a46-243	3102	206aa	ENSMUSP00000172730.1	Nonsense mediated decay		-	-
ENSMUST00000394364.1	Slc25a46-240	3088	96aa	ENSMUSP00000172727.1	Nonsense mediated decay		-	-
ENSMUST00000394359.1	Slc25a46-235	3033	204aa	ENSMUSP00000172722.1	Nonsense mediated decay		-	-
ENSMUST00000394366.1	Slc25a46-242	3017	96aa	ENSMUSP00000172729.1	Nonsense mediated decay		-	-
ENSMUST00000394360.1	Slc25a46-236	2955	178aa	ENSMUSP00000172723.1	Nonsense mediated decay		-	-
ENSMUST00000394365.1	Slc25a46-241	2955	97aa	ENSMUSP00000172728.1	Nonsense mediated decay		-	-
ENSMUST00000394362.1	Slc25a46-238	2941	96aa	ENSMUSP00000172725.1	Nonsense mediated decay		-	-
ENSMUST00000394363.1	Slc25a46-239	2895	96aa	ENSMUSP00000172726.1	Nonsense mediated decay		-	-
ENSMUST00000394368.1	Slc25a46-244	2882	157aa	ENSMUSP00000172731.1	Nonsense mediated decay		-	-
ENSMUST00000394369.1	Slc25a46-245	2846	114aa	ENSMUSP00000172732.1	Nonsense mediated decay		-	-
ENSMUST00000394372.1	Slc25a46-248	2826	96aa	ENSMUSP00000172735.1	Nonsense mediated decay		-	-
ENSMUST00000394370.1	Slc25a46-246	2766	121aa	ENSMUSP00000172733.1	Nonsense mediated decay		-	-
ENSMUST00000394373.1	Slc25a46-249	2725	196aa	ENSMUSP00000172736.1	Nonsense mediated decay		-	-
ENSMUST00000394371.1	Slc25a46-247	2642	96aa	ENSMUSP00000172734.1	Nonsense mediated decay		-	-
ENSMUST00000394361.1	Slc25a46-237	2625	95aa	ENSMUSP00000172724.1	Nonsense mediated decay		-	-
ENSMUST00000394374.1	Slc25a46-250	2564	96aa	ENSMUSP00000172737.1	Nonsense mediated decay		-	-
ENSMUST00000394375.1	Slc25a46-251	2407	109aa	ENSMUSP00000172738.1	Nonsense mediated decay		-	-
ENSMUST00000233997.2	Slc25a46-202	1823	239aa	ENSMUSP00000157089.2	Nonsense mediated decay		A0A3Q4L2U5	-
ENSMUST00000571179.1	Slc25a46-252	1219	239aa	ENSMUSP00000349542.1	Nonsense mediated decay		-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 4,406 bps, Translation length: 418 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9CQS4

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29110

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000060396.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000060396.8 Slc25a46-201

Summary

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Transcript: ENSMUST00000060396.8 Slc25a46-201

Summary

About Us

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