Mouse (GRCm39)
Description

EGF-like, fibronectin type III and laminin G domains [Source:MGI Symbol;Acc:MGI:2146149]

Gene Synonyms

nectican, pikachurin

Location
About this transcript

This transcript has 22 exons, is annotated with 52 domains and features, is associated with 10037 variant alleles and maps to 294 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000096494.5Egflam-20243911017aaENSMUSP00000094238.5
 
Protein coding
CCDS79359Q4VBE4 Ensembl CanonicalGENCODE basicAPPRIS ALT2TSL:1
ENSMUST00000058593.10Egflam-20147781009aaENSMUSP00000055599.4
 
Protein coding
CCDS27370Q4VBE4-2 GENCODE basicAPPRIS P2TSL:1
ENSMUST00000160207.8Egflam-204442037aaENSMUSP00000125188.2
 
Nonsense mediated decay
E0CXM4 TSL:1
ENSMUST00000162105.2Egflam-207446No protein-
 
Protein coding CDS not defined
-TSL:3
ENSMUST00000160273.8Egflam-2053327No protein-
 
Retained intron
-TSL:1
ENSMUST00000159726.2Egflam-203618No protein-
 
Retained intron
-TSL:2
ENSMUST00000160314.2Egflam-206490No protein-
 
Retained intron
-TSL:5
Statistics

Exons: 22, Coding exons: 22, Transcript length: 4,778 bps, Translation length: 1,009 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q4VBE4

CCDS

This transcript is a member of the Mouse CCDS set: CCDS27370

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000058593.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.