Transcript: ENSMUST00000058295.6 Erbb2-201

Description

erb-b2 receptor tyrosine kinase 2 [Source:MGI Symbol;Acc:MGI:95410]

Gene Synonyms

ErbB-2, HER-2, HER2, Neu, Neu oncogene, c-erbB2, c-neu, l11Jus8

Location

Chromosome 11: 98,303,296-98,328,542 forward strand.

About this transcript

This transcript has 27 exons, is annotated with 52 domains and features, is associated with 1844 variant alleles and maps to 319 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000062312.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000058295.6	Erbb2-201	5012	1256aa	ENSMUSP00000053897.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS25349	P70424	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000136032.2	Erbb2-202	4431	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000138066.2	Erbb2-203	388	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 27, Coding exons: 27, Transcript length: 5,012 bps, Translation length: 1,256 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P70424

CCDS

This transcript is a member of the Mouse CCDS set: CCDS25349

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000058295.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000058295.6 Erbb2-201

Summary

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Transcript: ENSMUST00000058295.6 Erbb2-201

Summary

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