Transcript: ENSMUST00000058159.6 Cnrip1-201

Description

cannabinoid receptor interacting protein 1 [Source:MGI Symbol;Acc:MGI:1917505]

Gene Synonyms

1500041B16Rik, 3110054C06Rik, 5330437A18Rik

Location

Chromosome 11: 17,001,818-17,029,371 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 3 domains and features, is associated with 2329 variant alleles and maps to 154 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000044629.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000058159.6	Cnrip1-201	1654	164aa	ENSMUSP00000050036.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS24447	Q5M8N0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000488052.1	Cnrip1-218	1989	129aa	ENSMUSP00000266415.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000488055.1	Cnrip1-221	1705	112aa	ENSMUSP00000266418.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000488043.1	Cnrip1-209	1655	155aa	ENSMUSP00000266406.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000488038.1	Cnrip1-204	1321	144aa	ENSMUSP00000266401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000131515.2	Cnrip1-202	850	184aa	ENSMUSP00000122150.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F7C0H6 Q9CW19	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000488040.1	Cnrip1-206	3637	60aa	ENSMUSP00000266403.1	Nonsense mediated decay		-	-
ENSMUST00000488044.1	Cnrip1-210	3571	60aa	ENSMUSP00000266407.1	Nonsense mediated decay		-	-
ENSMUST00000488041.1	Cnrip1-207	1837	63aa	ENSMUSP00000266404.1	Nonsense mediated decay		-	-
ENSMUST00000488045.1	Cnrip1-211	1813	93aa	ENSMUSP00000266408.1	Nonsense mediated decay		-	-
ENSMUST00000488046.1	Cnrip1-212	1807	63aa	ENSMUSP00000266409.1	Nonsense mediated decay		-	-
ENSMUST00000488048.1	Cnrip1-214	1791	66aa	ENSMUSP00000266411.1	Nonsense mediated decay		-	-
ENSMUST00000488057.1	Cnrip1-223	1789	60aa	ENSMUSP00000266420.1	Nonsense mediated decay		-	-
ENSMUST00000488051.1	Cnrip1-217	1770	57aa	ENSMUSP00000266414.1	Nonsense mediated decay		-	-
ENSMUST00000488054.1	Cnrip1-220	1769	66aa	ENSMUSP00000266417.1	Nonsense mediated decay		-	-
ENSMUST00000488053.1	Cnrip1-219	1738	77aa	ENSMUSP00000266416.1	Nonsense mediated decay		-	-
ENSMUST00000488039.1	Cnrip1-205	1707	73aa	ENSMUSP00000266402.1	Nonsense mediated decay		-	-
ENSMUST00000488056.1	Cnrip1-222	1677	73aa	ENSMUSP00000266419.1	Nonsense mediated decay		-	-
ENSMUST00000488042.1	Cnrip1-208	1657	78aa	ENSMUSP00000266405.1	Nonsense mediated decay		-	-
ENSMUST00000488049.1	Cnrip1-215	1619	60aa	ENSMUSP00000266412.1	Nonsense mediated decay		-	-
ENSMUST00000488050.1	Cnrip1-216	1589	65aa	ENSMUSP00000266413.1	Nonsense mediated decay		-	-
ENSMUST00000488047.1	Cnrip1-213	1585	64aa	ENSMUSP00000266410.1	Nonsense mediated decay		-	-
ENSMUST00000578340.1	Cnrip1-224	1553	62aa	ENSMUSP00000356703.1	Nonsense mediated decay		-	-
ENSMUST00000135637.2	Cnrip1-203	2153	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,654 bps, Translation length: 164 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5M8N0

CCDS

This transcript is a member of the Mouse CCDS set: CCDS24447

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000058159.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000058159.6 Cnrip1-201

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Transcript: ENSMUST00000058159.6 Cnrip1-201

Summary

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