Transcript: ENSMUST00000050372.10 Crb2-201

Description

crumbs family member 2 [Source:MGI Symbol;Acc:MGI:2679260]

Location

Chromosome 2: 37,666,261-37,689,115 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 149 domains and features, is associated with 1435 variant alleles and maps to 192 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000035403.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000050372.10	Crb2-201	6372	1282aa	ENSMUSP00000058007.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50580	Q80YA8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000147600.3	Crb2-203	1132	197aa	ENSMUSP00000144709.2	Nonsense mediated decay		A0A0N4SUJ6	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000137693.2	Crb2-202	502	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 6,372 bps, Translation length: 1,282 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q80YA8

CCDS

This transcript is a member of the Mouse CCDS set: CCDS50580

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000050372.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000050372.10 Crb2-201

Summary

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Transcript: ENSMUST00000050372.10 Crb2-201

Summary

About Us

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