Transcript: ENSMUST00000049819.4 Vmn1r179-201

Description

vomeronasal 1 receptor 179 [Source:MGI Symbol;Acc:MGI:3033486]

Gene Synonyms

V1rd17

Location

About this transcript

This transcript has 1 exon, is annotated with 11 domains and features, is associated with 526 variant alleles and maps to 217 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000049819.4	Vmn1r179-201	972	323aa	ENSMUSP00000055372.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20936	Q8R2B4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000236851.2	Vmn1r179-202	7135	323aa	ENSMUSP00000157551.2	Nonsense mediated decay	CCDS20936	Q8R2B4	-

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 972 bps, Translation length: 323 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS20936

Transcript Support Level (TSL)

TSL:NA

Version

ENSMUST00000049819.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.