Transcript: ENSMUST00000049206.6 Arhgef3-201

Description

Rho guanine nucleotide exchange factor (GEF) 3 [Source:MGI Symbol;Acc:MGI:1918954]

Gene Synonyms

1200004I24Rik, 9830169H03Rik, C76747

Location

Chromosome 14: 26,959,996-27,125,861 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 14 domains and features, is associated with 9383 variant alleles and maps to 211 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000021895.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000225949.2	Arhgef3-204	3198	551aa	ENSMUSP00000153396.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YDE6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000224981.2	Arhgef3-202	3618	524aa	ENSMUSP00000153124.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2X0SFN9 Q91X46	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000049206.6	Arhgef3-201	3585	531aa	ENSMUSP00000046486.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26886	Q91X46-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000225494.2	Arhgef3-203	572	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 3,585 bps, Translation length: 531 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q91X46

CCDS

This transcript is a member of the Mouse CCDS set: CCDS26886

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000049206.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000049206.6 Arhgef3-201

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Transcript: ENSMUST00000049206.6 Arhgef3-201

Summary

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